Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AN159_RS01170 Genome accession   NZ_CP012694
Coordinates   209543..210922 (+) Length   459 a.a.
NCBI ID   WP_079871344.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 331401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 204543..215922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN159_RS01150 (AN159_01150) - 204894..205655 (+) 762 WP_069972245.1 uroporphyrinogen-III synthase -
  AN159_RS01155 (AN159_01155) - 205670..207004 (+) 1335 WP_002246092.1 uroporphyrinogen-III C-methyltransferase -
  AN159_RS01160 (AN159_01160) - 207001..208218 (+) 1218 WP_002246093.1 heme biosynthesis protein HemY -
  AN159_RS01165 (AN159_01165) hemE 208293..209354 (+) 1062 Protein_222 uroporphyrinogen decarboxylase -
  AN159_RS01170 (AN159_01170) radA 209543..210922 (+) 1380 WP_079871344.1 DNA repair protein RadA Machinery gene
  AN159_RS01175 (AN159_01175) - 211198..211677 (-) 480 WP_002246096.1 DUF302 domain-containing protein -
  AN159_RS01180 (AN159_01180) - 211809..212168 (-) 360 WP_069972247.1 rhodanese-like domain-containing protein -
  AN159_RS01185 (AN159_01185) recB 212207..215821 (-) 3615 WP_069972248.1 exodeoxyribonuclease V subunit beta Machinery gene

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49611.19 Da        Isoelectric Point: 7.3293

>NTDB_id=156582 AN159_RS01170 WP_079871344.1 209543..210922(+) (radA) [Neisseria meningitidis strain 331401]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNSRFQSWAADPSTVQPLSAVTAAEVPRNPTGMSELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNVKEFPNLKIYGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=156582 AN159_RS01170 WP_079871344.1 209543..210922(+) (radA) [Neisseria meningitidis strain 331401]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCGCCGAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAAGAAAGCTTAGCCGCGCCCGAGCCGAAAAACTCCCGCTTCCAATCTTGGGCGGCGG
ATCCCTCGACCGTCCAACCCCTCTCCGCCGTTACCGCTGCCGAAGTGCCGCGCAACCCGACCGGCATGAGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGCGCGGTCATCCTGCTCGGCGGCGATCCCGGCATCGGCAAATCCACGCTGTT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAGGAATCCGCCCAACAAGTCGCCC
TGCGCGCGCAGCGTTTGGAACTGCCCACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCCATTCAGACGGCC
TTGAAACAGCATCAGCCCGAAGTCGTGGTTATCGATTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAGTGTGCAGCCCAACTGACGCGCATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTTGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAACTGGGCGTGTTCGCGAT
GACGGAAAACGGTTTGAAAGGTGTGTCCAACCCGTCCGCCATCTTCCTTGCCAGCTACCGCGACGACACGCCCGGTTCGT
GCGTTTTGGTTACGCAGGAAGGCAGCCGACCGCTTTTGGTTGAAATTCAGGCATTGGTCGATGACGCGCACGGATTCACC
CCCAAACGCCTTACCGTCGGACTGGAACAAAACCGCCTCGCGATGCTGCTCGCCGTGTTAAACCGACACGGCGGCATCGC
CTGTTTCGATCAGGATGTGTTCCTCAACGCCGTCGGTGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCAGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCGCTGCCCGAAAAAATGGTTGCATTTGGAGAAATCGGTTTGAGCGGTGAA
GTCCGCCCCGTCGCGCGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTCCCAAAAGC
CAATATGCCGCGCAACGTCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATCGATATTT
GCCGCGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(76-220)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.89

99.129

0.495
  radA Streptococcus mitis NCTC 12261

47.45

98.257

0.466
  radA Streptococcus pneumoniae Rx1

47.228

98.257

0.464
  radA Streptococcus pneumoniae D39

47.228

98.257

0.464
  radA Streptococcus pneumoniae R6

47.228

98.257

0.464
  radA Streptococcus pneumoniae TIGR4

47.228

98.257

0.464
  radA Streptococcus mitis SK321

47.228

98.257

0.464

Multiple sequence alignment