Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AK973_RS26705 Genome accession   NZ_CP012680
Coordinates   6110053..6111399 (+) Length   448 a.a.
NCBI ID   WP_053163367.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum strain LBUM300     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6105053..6116399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK973_RS26680 (AK973_5325) pgeF 6105267..6105992 (-) 726 WP_003205694.1 peptidoglycan editing factor PgeF -
  AK973_RS26685 (AK973_5326) rluD 6105989..6106951 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AK973_RS26690 (AK973_5327) - 6107102..6108118 (+) 1017 WP_003205698.1 outer membrane protein assembly factor BamD -
  AK973_RS26695 - 6108244..6108477 (+) 234 WP_013694237.1 PP0621 family protein -
  AK973_RS26700 (AK973_5329) pilS 6108467..6110056 (+) 1590 WP_060614143.1 two-component system sensor histidine kinase NtrB Regulator
  AK973_RS26705 (AK973_5330) pilR 6110053..6111399 (+) 1347 WP_053163367.1 sigma-54-dependent transcriptional regulator Regulator
  AK973_RS26710 - 6111481..6111846 (-) 366 WP_038858257.1 DUF6124 family protein -
  AK973_RS26715 (AK973_5332) - 6112527..6113957 (-) 1431 WP_039011935.1 IS1182 family transposase -
  AK973_RS26720 (AK973_5333) - 6113956..6114141 (+) 186 WP_060614144.1 hypothetical protein -
  AK973_RS26730 (AK973_5335) - 6114802..6115095 (+) 294 WP_020300742.1 transposase -
  AK973_RS26735 (AK973_5336) - 6115092..6115955 (+) 864 WP_053162200.1 IS3 family transposase -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50156.56 Da        Isoelectric Point: 5.9886

>NTDB_id=156333 AK973_RS26705 WP_053163367.1 6110053..6111399(+) (pilR) [Pseudomonas brassicacearum strain LBUM300]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPGTTLERSLLGNSPPMLSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQRFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTGSPPVRLHPQALDALKNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=156333 AK973_RS26705 WP_053163367.1 6110053..6111399(+) (pilR) [Pseudomonas brassicacearum strain LBUM300]
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGGGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAACGCTACCCCCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGAGAGCTGGTCACCAGTGCCCTGCGCCTGCCGCCGGTCGCCACGCCGGGCACGACCC
TCGAGCGCAGCCTGCTGGGTAACTCGCCACCGATGCTCAGCGTGCGCAAGCAGATCGAGAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGCCCTCGTGCCAA
CCAGCGCTTCGTACCGGTCAACTGTGGGGCGATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAGGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGCGGGACCCTGTTCCTCGATGAAGTGGCC
GACTTGCCCTTGGCGATGCAGGTCAAGCTGTTGCGAGCCATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAACAGGA
AGAAGTGGTGGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTGGACGGCGAAGTGGCTGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTGCCGCCGTTGCGTGAACGTCGTGAAGACATCGAGCTGCTGGCT
AACCACATGCTCCAGCGCCTGGCGGCCAACACCGGCAGTCCACCGGTCAGATTGCATCCCCAAGCGTTGGACGCTCTCAA
GAATTACCGCTTCCCGGGCAATGTGCGAGAGCTGGAGAACATGCTCGAACGTGCCTACACCCTTTGTGAACAGCAGCAGA
TCGAAGCGGATGACCTGCGCCTGGCCGAGGGCAATAGTACTACTGAGGCAGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTTGAGCGCAAGCTCATCCTCCAGGCGCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTTGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.829

99.107

0.781
  pilR Acinetobacter baumannii strain A118

50.327

100

0.516

Multiple sequence alignment