Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AK973_RS26595 | Genome accession | NZ_CP012680 |
| Coordinates | 6092521..6093390 (+) | Length | 289 a.a. |
| NCBI ID | WP_013694232.1 | Uniprot ID | F2KLD3 |
| Organism | Pseudomonas brassicacearum strain LBUM300 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6087521..6098390
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AK973_RS26570 (AK973_5307) | - | 6087725..6088021 (+) | 297 | WP_013694228.1 | DUF2845 domain-containing protein | - |
| AK973_RS26575 (AK973_5308) | - | 6088350..6088703 (-) | 354 | WP_003205664.1 | BON domain-containing protein | - |
| AK973_RS26580 | - | 6088967..6089374 (-) | 408 | WP_003205666.1 | pilin | - |
| AK973_RS26585 (AK973_5309) | pilB | 6089599..6091299 (+) | 1701 | WP_003205669.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AK973_RS26590 (AK973_5310) | pilC | 6091302..6092519 (+) | 1218 | WP_003205670.1 | type II secretion system F family protein | Machinery gene |
| AK973_RS26595 (AK973_5311) | pilD | 6092521..6093390 (+) | 870 | WP_013694232.1 | prepilin peptidase | Machinery gene |
| AK973_RS26600 (AK973_5312) | coaE | 6093390..6094013 (+) | 624 | WP_013694233.1 | dephospho-CoA kinase | - |
| AK973_RS26605 (AK973_5313) | yacG | 6094010..6094216 (+) | 207 | WP_003205675.1 | DNA gyrase inhibitor YacG | - |
| AK973_RS26610 (AK973_5314) | - | 6094213..6094428 (-) | 216 | WP_013694234.1 | hypothetical protein | - |
| AK973_RS26615 (AK973_5315) | - | 6094492..6095178 (-) | 687 | WP_003205678.1 | energy-coupling factor ABC transporter permease | - |
| AK973_RS26620 (AK973_5316) | - | 6095220..6095630 (-) | 411 | WP_003205679.1 | tautomerase family protein | - |
| AK973_RS26625 (AK973_5317) | - | 6095782..6096675 (+) | 894 | WP_003205681.1 | LysR substrate-binding domain-containing protein | - |
| AK973_RS26630 (AK973_5318) | - | 6097224..6097850 (+) | 627 | WP_003205682.1 | DUF1780 domain-containing protein | - |
| AK973_RS26635 (AK973_5319) | - | 6097847..6098374 (+) | 528 | WP_003205684.1 | MOSC domain-containing protein | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31929.10 Da Isoelectric Point: 8.0578
>NTDB_id=156331 AK973_RS26595 WP_013694232.1 6092521..6093390(+) (pilD) [Pseudomonas brassicacearum strain LBUM300]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLILRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWHAAMVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLLG
AVIGAIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLILRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWHAAMVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLLG
AVIGAIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=156331 AK973_RS26595 WP_013694232.1 6092521..6093390(+) (pilD) [Pseudomonas brassicacearum strain LBUM300]
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCAGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATACTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAATTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGTTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGCTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGTTGCTGGGC
GCCGTTATTGGGGCGATTGTGCTGCGCTTGCGTGATGCCCCGGGGTCGACGCAGATCCCCTTTGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCAGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATACTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAATTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGTTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGCTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGTTGCTGGGC
GCCGTTATTGGGGCGATTGTGCTGCGCTTGCGTGATGCCCCGGGGTCGACGCAGATCCCCTTTGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.465 |
98.27 |
0.516 |
| pilD | Vibrio campbellii strain DS40M4 |
50.877 |
98.616 |
0.502 |
| pilD | Acinetobacter baumannii D1279779 |
49.11 |
97.232 |
0.478 |
| pilD | Acinetobacter nosocomialis M2 |
49.11 |
97.232 |
0.478 |
| pilD | Neisseria gonorrhoeae MS11 |
47.387 |
99.308 |
0.471 |