Detailed information NTG0156327

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AK973_RS22625
• Genome accession: NZ_CP012680
• Coordinates: 5226264..5228510 (-)
• Length: 748 a.a.
• NCBI ID: WP_039013655.1
• Uniprot ID: -
• Organism: Pseudomonas brassicacearum strain LBUM300
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5221264..5233510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AK973_RS22590 (AK973_4504)	murB	5221647..5222666 (-)	1020	WP_060614061.1	UDP-N-acetylmuramate dehydrogenase	-
AK973_RS22595 (AK973_4505)	-	5222663..5223127 (-)	465	WP_053163087.1	low molecular weight protein-tyrosine-phosphatase	-
AK973_RS22600 (AK973_4506)	kdsB	5223127..5223891 (-)	765	WP_003204286.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AK973_RS22605 (AK973_4507)	-	5223888..5224073 (-)	186	WP_003179363.1	Trm112 family protein	-
AK973_RS22610 (AK973_4508)	lpxK	5224097..5225107 (-)	1011	WP_039013653.1	tetraacyldisaccharide 4'-kinase	-
AK973_RS22615 (AK973_4509)	-	5225107..5225535 (-)	429	WP_013694002.1	ExbD/TolR family protein	-
AK973_RS22620 (AK973_4510)	exbB	5225532..5226167 (-)	636	WP_003204294.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
AK973_RS22625 (AK973_4511)	comA	5226264..5228510 (-)	2247	WP_039013655.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AK973_RS22630 (AK973_4512)	-	5228655..5229170 (+)	516	WP_003204298.1	DUF2062 domain-containing protein	-
AK973_RS22635 (AK973_4513)	-	5229257..5230036 (-)	780	WP_003204300.1	ABC transporter permease	-
AK973_RS22640 (AK973_4514)	-	5230039..5230971 (-)	933	WP_003204301.1	ABC transporter ATP-binding protein	-
AK973_RS22645 (AK973_4515)	-	5231108..5231731 (-)	624	WP_003204303.1	glutathione S-transferase family protein	-
AK973_RS22650 (AK973_4516)	-	5231777..5232436 (-)	660	WP_013694005.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 80999.36 Da
• Isoelectric Point: 9.6855

>NTDB_id=156327 AK973_RS22625 WP_039013655.1 5226264..5228510(-) (comA) [Pseudomonas brassicacearum strain LBUM300]
MRTGLVALALGLLAPIFLPALPPIWLITAMPVLALMVLPFRTYPLGFFLFGLAWACLSAQCALDDRLPIALDGETRWVEG
RVIGLPQQGEGVMRFELADVHSRRTRLPTAMRLAWFGGPPVNSGERWRLAVKLKRPSGLLNPHGFDYAAWLLSRGIGATG
TIKDGHLLQAARGAWRDEVRQALAQVDAHGRSGALAALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPVGLAWLPWACGLAFCAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKQPDPWWAWLLAFVGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVALGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPLAL
LGTALLPVPLMGEGLLWIAGGLLDLLFKGLALVAGRMPAWVPAAVPPWALGIAAFGAFLLLLPKGVPLRVLGWPMVLLMV
FPPQEHLPQGHAEIWQLDVGQGLAVLVRTRRHALLYDAGPRFGEADAGERVVLPTLRKLGVRRLDLMLLSHADADHAGGA
RAVRNGLPTLEVISGDPDALPAELLAGPCDSGRRWEWDGVGFELWRWASAVESNQKSCVLVVEAGGERLLLTGDIDTPAE
RALLDEALAVPIQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRSGLAIYDSAEQGAIRLLL
GAFGVPRTEAGHRRYWRDPPAVGPPGQY

Nucleotide

• Length: 2247 bp

>NTDB_id=156327 AK973_RS22625 WP_039013655.1 5226264..5228510(-) (comA) [Pseudomonas brassicacearum strain LBUM300]
ATGCGCACAGGGTTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGATTTTTTTGCCGGCACTGCCGCCGATATGGCTGAT
TACAGCCATGCCGGTGCTGGCGCTGATGGTGTTGCCGTTTCGAACCTACCCGCTGGGTTTTTTCCTGTTCGGGCTGGCCT
GGGCCTGCCTGTCGGCGCAGTGTGCGCTGGATGACCGGTTACCCATCGCGCTCGACGGCGAAACCCGCTGGGTCGAGGGT
CGAGTGATCGGTTTGCCGCAACAGGGCGAAGGCGTGATGCGCTTCGAACTGGCCGATGTCCATTCACGCCGTACCCGTCT
ACCGACGGCGATGCGTCTCGCCTGGTTCGGTGGTCCGCCGGTCAACAGCGGCGAACGATGGCGATTGGCGGTGAAACTCA
AGCGGCCCAGTGGGCTGCTGAACCCGCACGGCTTCGACTATGCCGCCTGGTTGCTGAGCCGCGGCATCGGCGCGACCGGT
ACCATCAAGGATGGCCATCTCCTGCAAGCGGCCCGGGGGGCCTGGCGTGACGAGGTGCGCCAGGCGCTGGCACAGGTCGA
TGCCCACGGCCGCTCCGGTGCGCTGGCGGCTCTGGTGCTGGGCGACGGCGGCGGGCTGAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTCCACTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTCGCCGGCCTGGTGTACCTGTTG
GTGGCCGGCGCGGCGCGTTATGGTCTTTGGCCGGTGGGTCTGGCCTGGTTGCCTTGGGCCTGTGGGCTGGCCTTCTGTGC
CGCCCTGGGCTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGGCGGGCCTGCGCGATGATCGGCCTGGTGCTGCTGT
GGCGCTTGCGTTTCAAACAGCCAGATCCGTGGTGGGCATGGCTGCTGGCCTTCGTCGGGGTGCTGGTGTTCGACCCGCTT
GCCAGCTTGCGGCCGGGGTTCTGGTTGTCGTTTGCGGCCGTGGCCATATTGATGTTCACCTTTGGCGCTCGCCTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGGTCGCGCTCGGCCTGTGTCCGTTGTTGTTGATCGTGGGTT
TGCCGGTCAGCCTCAGCGGGCCGTTGGTGAACCTGCTCGCGGTGCCCTGGATCAGCCTGTTGGTATTGCCGCTGGCGCTG
CTTGGCACGGCATTGTTGCCGGTGCCGCTCATGGGCGAAGGCCTGCTGTGGATTGCCGGTGGGCTGCTCGATCTGCTGTT
CAAGGGGCTGGCACTGGTTGCCGGACGAATGCCGGCCTGGGTTCCTGCCGCAGTCCCGCCCTGGGCCTTGGGCATCGCCG
CCTTCGGTGCTTTTTTGCTGCTGTTGCCCAAAGGTGTGCCGCTACGTGTACTGGGGTGGCCGATGGTGTTGCTGATGGTT
TTTCCACCGCAAGAACACCTGCCGCAAGGGCACGCCGAGATCTGGCAACTGGACGTGGGCCAAGGGCTGGCGGTGCTGGT
GCGGACCCGGCGGCACGCCCTGCTTTACGACGCCGGGCCGCGCTTTGGCGAGGCTGACGCGGGCGAGCGGGTCGTCCTGC
CGACCTTGCGCAAACTGGGTGTGCGCCGCTTGGACCTGATGTTGCTCAGCCATGCCGACGCCGATCACGCTGGCGGTGCC
CGCGCCGTGCGCAATGGGCTGCCGACGCTGGAAGTGATCAGCGGCGATCCGGACGCGCTGCCCGCCGAACTGCTGGCCGG
GCCTTGCGACAGTGGCAGGCGCTGGGAATGGGATGGGGTCGGGTTCGAACTGTGGCGGTGGGCCTCTGCCGTCGAGAGCA
ACCAGAAGTCCTGTGTCTTGGTGGTGGAGGCGGGCGGTGAACGCCTGCTGCTGACCGGCGATATCGACACCCCTGCCGAG
CGCGCCTTGCTCGACGAGGCCCTGGCCGTGCCGATCCAGTGGCTGGCCGCGCCGCATCACGGCAGTCGCAGTTCGTCGTC
GATGGCGTTGCTGTCGCGTCTCAAGCCGCATTCAGTATTGATCTCCCGAGGGCAGGGCAACGCATTCGGCCACCCTCATC
CCCAGGTGATGGCCCGGTATCGGCGCTCAGGCCTGGCGATCTACGACAGCGCCGAGCAGGGCGCCATTCGTCTGCTACTG
GGGGCTTTCGGGGTGCCGCGCACCGAGGCCGGGCACCGCCGTTATTGGCGTGATCCGCCAGCCGTCGGGCCACCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Domain of unknown function (DUF4131) (DUF4131) (23-165)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.732	95.722	0.591
comA	Ralstonia pseudosolanacearum GMI1000	32.038	100	0.364