Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AK973_RS22620 Genome accession   NZ_CP012680
Coordinates   5225532..5226167 (-) Length   211 a.a.
NCBI ID   WP_003204294.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum strain LBUM300     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5220532..5231167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK973_RS22585 (AK973_4503) - 5220911..5221381 (-) 471 WP_003204280.1 (2Fe-2S)-binding protein -
  AK973_RS22590 (AK973_4504) murB 5221647..5222666 (-) 1020 WP_060614061.1 UDP-N-acetylmuramate dehydrogenase -
  AK973_RS22595 (AK973_4505) - 5222663..5223127 (-) 465 WP_053163087.1 low molecular weight protein-tyrosine-phosphatase -
  AK973_RS22600 (AK973_4506) kdsB 5223127..5223891 (-) 765 WP_003204286.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AK973_RS22605 (AK973_4507) - 5223888..5224073 (-) 186 WP_003179363.1 Trm112 family protein -
  AK973_RS22610 (AK973_4508) lpxK 5224097..5225107 (-) 1011 WP_039013653.1 tetraacyldisaccharide 4'-kinase -
  AK973_RS22615 (AK973_4509) - 5225107..5225535 (-) 429 WP_013694002.1 ExbD/TolR family protein -
  AK973_RS22620 (AK973_4510) exbB 5225532..5226167 (-) 636 WP_003204294.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AK973_RS22625 (AK973_4511) comA 5226264..5228510 (-) 2247 WP_039013655.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AK973_RS22630 (AK973_4512) - 5228655..5229170 (+) 516 WP_003204298.1 DUF2062 domain-containing protein -
  AK973_RS22635 (AK973_4513) - 5229257..5230036 (-) 780 WP_003204300.1 ABC transporter permease -
  AK973_RS22640 (AK973_4514) - 5230039..5230971 (-) 933 WP_003204301.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22842.95 Da        Isoelectric Point: 8.0840

>NTDB_id=156326 AK973_RS22620 WP_003204294.1 5225532..5226167(-) (exbB) [Pseudomonas brassicacearum strain LBUM300]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=156326 AK973_RS22620 WP_003204294.1 5225532..5226167(-) (exbB) [Pseudomonas brassicacearum strain LBUM300]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGCTGCGAGCCAGTTCGCCCTTGGGGGAAGTCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTACAT
CAATACCCTGGGCACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GTGCGTTCACCGGTTCCGGCATGACCACTAACGCTGCGGTGCTGGCGGGGGGGATCTCCAAGGCTTTGATCACCACCGCT
GCTGGCCTGATGGTCGGTATCCCTTCGGTGTTCTTCCACAGGTTCCTGCAACGCCGCGTCGACGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGGGACCGTGACGTGGACCTGGCTGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844

Multiple sequence alignment