Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AOC04_RS03050 Genome accession   NZ_CP012676
Coordinates   646612..648828 (+) Length   738 a.a.
NCBI ID   WP_171970550.1    Uniprot ID   -
Organism   Pseudomonas versuta strain L10.10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 641612..653828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOC04_RS03030 (AOC04_03025) - 643269..643892 (+) 624 WP_060691091.1 glutathione S-transferase family protein -
  AOC04_RS03035 (AOC04_03030) - 644039..644971 (+) 933 WP_060691092.1 ABC transporter ATP-binding protein -
  AOC04_RS03040 (AOC04_03035) - 644968..645747 (+) 780 WP_060691093.1 ABC transporter permease -
  AOC04_RS03045 (AOC04_03040) - 645963..646478 (-) 516 WP_060691094.1 DUF2062 domain-containing protein -
  AOC04_RS03050 (AOC04_03045) comA 646612..648828 (+) 2217 WP_171970550.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AOC04_RS03055 (AOC04_03050) exbB 648947..649582 (+) 636 WP_060696858.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AOC04_RS03060 (AOC04_03055) - 649579..650007 (+) 429 WP_060691096.1 ExbD/TolR family protein -
  AOC04_RS03065 (AOC04_03060) lpxK 650007..651017 (+) 1011 WP_060691097.1 tetraacyldisaccharide 4'-kinase -
  AOC04_RS03070 (AOC04_03065) - 651043..651228 (+) 186 WP_003442540.1 Trm112 family protein -
  AOC04_RS03075 (AOC04_03070) kdsB 651225..651989 (+) 765 WP_060691098.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AOC04_RS03080 (AOC04_03075) - 651989..652453 (+) 465 WP_060691099.1 low molecular weight protein-tyrosine-phosphatase -
  AOC04_RS03085 (AOC04_03080) murB 652450..653469 (+) 1020 WP_060691100.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80474.53 Da        Isoelectric Point: 10.4058

>NTDB_id=156234 AOC04_RS03050 WP_171970550.1 646612..648828(+) (comA) [Pseudomonas versuta strain L10.10]
MHTGMLALASGLIALRFLPGLPPGGWLLSMLVAGLLLVVFRLYPPGLFLIGLTWACFQGQAALDDRLSAALDGRTLWVEG
RVVGLPQKSGASLRFELQDAQSRHATLPATIRLSWYGGPPLNSGERWRLAVKLKQPRGLLNPQGFDYQAWLLAQRIGATG
TVKTGQLLEPATHAWRDGLRKRLLRTDANERAPWLAALVMGDSSGLSSEDWKLLQATGTVHLLVISGQHIGLLAGLIYGL
IALLARYGWWPRRLAWLPWACGLAFFGALAYGLLAGFGVPVQRACVMLGLVLIWRLRFRHLGGWMPFLVALNAVLIIEPL
ASLMPGFWLSFTAVAVLMFTFGGRLGPWGWRVAWTRPQILIALGLFPMLWILGLPVSLSGPLANLVAVPWISLLVLPTAL
LGTLLLPVPWLGETLLWVSGGLLDGLIRGLALLAGHLSPWLPAAVPFGVWLLSAFGVLLLLLPAGVILRPLGWPLVLLAV
FTPCEPIPRGQVEVWQLDVGQGLAIVLRTRNHTLLYDAGPKVRDFDQGERVVVPVLRSLGVGELDLMLVSHAHLDHAGGA
LAVQREIGVMRVISGEVSGLPEQLRAQPCISGQSWEWDGVRFSLWQWSAASDSNQRSCVLQVEASDERLLLTGDIDAQAE
RALLQSPLAVPTRWLQAPHHGSRTSSSADFLKALASQVVLISRGHGNSFGHPHPQVLARYQALGMQALDSAERGAVRFRL
GTFGNAESLRDQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=156234 AOC04_RS03050 WP_171970550.1 646612..648828(+) (comA) [Pseudomonas versuta strain L10.10]
ATGCACACAGGAATGCTGGCACTGGCGTCGGGCTTGATTGCGTTGCGCTTTTTACCGGGGCTGCCACCGGGCGGGTGGTT
GCTGTCAATGCTGGTTGCGGGGCTGCTGCTGGTAGTGTTTCGCCTCTATCCGCCCGGGCTCTTCCTGATTGGACTGACCT
GGGCCTGCTTTCAGGGGCAAGCCGCCCTGGATGATCGATTGTCCGCTGCGCTGGATGGTCGCACGCTCTGGGTCGAGGGG
CGGGTGGTCGGGTTGCCACAAAAGTCCGGTGCCTCGCTGCGTTTTGAATTGCAGGATGCGCAGTCGCGCCATGCAACGTT
GCCTGCAACCATTCGGCTGAGCTGGTATGGCGGGCCGCCGCTCAACAGTGGCGAGCGTTGGCGGCTCGCAGTCAAGCTCA
AGCAACCCCGCGGGTTACTTAACCCCCAGGGGTTTGATTATCAGGCCTGGTTGCTGGCGCAGCGGATTGGTGCAACCGGC
ACTGTCAAAACCGGCCAGTTACTCGAGCCGGCCACTCACGCCTGGCGCGACGGCCTGCGCAAGCGTCTGTTACGAACTGA
TGCCAATGAACGTGCGCCGTGGCTTGCGGCGCTGGTTATGGGCGACAGTTCGGGGTTGAGCAGCGAGGACTGGAAGCTGC
TGCAAGCGACCGGGACTGTGCATTTGCTGGTGATCTCCGGGCAGCATATTGGGCTGTTGGCCGGACTGATTTACGGCCTG
ATCGCCTTGTTGGCACGTTATGGGTGGTGGCCGCGTCGATTGGCATGGCTGCCCTGGGCCTGTGGCCTGGCGTTTTTCGG
TGCGCTGGCCTATGGCTTGCTCGCAGGCTTCGGGGTCCCGGTGCAGCGCGCGTGCGTGATGCTGGGTCTGGTGCTGATAT
GGCGTCTGCGGTTTCGGCATCTGGGGGGCTGGATGCCATTTTTGGTGGCGCTCAATGCGGTGCTGATCATTGAGCCGCTG
GCAAGTCTGATGCCGGGTTTTTGGCTGTCCTTTACCGCTGTGGCGGTGCTGATGTTTACCTTTGGCGGGCGGTTGGGGCC
GTGGGGCTGGCGTGTGGCGTGGACCCGGCCGCAAATATTGATTGCCCTGGGCCTGTTTCCGATGCTGTGGATACTTGGCT
TGCCCGTCAGCCTGAGCGGTCCGCTGGCCAATCTGGTGGCTGTGCCCTGGATCAGCCTGCTGGTGCTGCCGACAGCCCTT
TTAGGCACATTGCTGTTGCCGGTGCCCTGGCTTGGCGAAACCCTGTTATGGGTTTCAGGCGGTTTGCTTGACGGGTTAAT
TCGGGGGCTGGCTTTGCTGGCCGGGCATTTATCTCCCTGGCTGCCTGCAGCAGTGCCGTTTGGTGTATGGCTTTTGAGCG
CTTTTGGAGTGCTGCTTCTGTTGTTGCCGGCAGGCGTGATTCTCCGTCCGCTTGGCTGGCCGTTGGTGTTGCTCGCAGTT
TTTACCCCCTGTGAACCGATCCCTCGGGGGCAGGTCGAGGTGTGGCAACTGGATGTCGGGCAAGGGTTGGCTATAGTGCT
GCGCACCCGCAATCACACGCTGCTGTATGACGCTGGACCCAAGGTCAGGGATTTTGATCAGGGCGAGCGGGTGGTGGTTC
CGGTGCTGCGTTCCCTGGGGGTAGGCGAGCTGGACCTGATGCTTGTCAGTCATGCGCATCTGGATCACGCCGGCGGGGCA
TTGGCGGTGCAGCGGGAAATCGGTGTGATGCGGGTAATCAGCGGCGAGGTGTCAGGGCTGCCTGAGCAATTACGGGCGCA
GCCTTGTATCAGCGGCCAGAGCTGGGAGTGGGACGGGGTGAGGTTTTCACTCTGGCAGTGGTCCGCGGCGAGTGACAGCA
ATCAGAGATCCTGCGTGCTGCAGGTCGAAGCCAGCGACGAGCGGCTTCTGCTGACGGGGGATATTGATGCCCAGGCTGAG
CGTGCCTTGTTGCAAAGCCCGCTGGCAGTTCCCACCCGCTGGTTGCAGGCCCCGCACCACGGAAGCCGCACTTCATCGTC
GGCGGATTTTCTCAAGGCGCTGGCATCGCAGGTGGTGTTGATCTCCCGTGGTCATGGCAACAGTTTTGGTCATCCCCACC
CTCAAGTGCTGGCGCGCTATCAGGCGTTGGGCATGCAAGCCCTGGACAGTGCCGAGCGGGGGGCGGTGCGATTTCGATTA
GGCACCTTTGGCAACGCAGAGTCGCTGCGTGATCAGCGCCGTTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(19-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.362

97.425

0.588
  comA Ralstonia pseudosolanacearum GMI1000

34.059

100

0.36

Multiple sequence alignment