Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AOC04_RS03055 Genome accession   NZ_CP012676
Coordinates   648947..649582 (+) Length   211 a.a.
NCBI ID   WP_060696858.1    Uniprot ID   -
Organism   Pseudomonas versuta strain L10.10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 643947..654582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOC04_RS03035 (AOC04_03030) - 644039..644971 (+) 933 WP_060691092.1 ABC transporter ATP-binding protein -
  AOC04_RS03040 (AOC04_03035) - 644968..645747 (+) 780 WP_060691093.1 ABC transporter permease -
  AOC04_RS03045 (AOC04_03040) - 645963..646478 (-) 516 WP_060691094.1 DUF2062 domain-containing protein -
  AOC04_RS03050 (AOC04_03045) comA 646612..648828 (+) 2217 WP_171970550.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AOC04_RS03055 (AOC04_03050) exbB 648947..649582 (+) 636 WP_060696858.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AOC04_RS03060 (AOC04_03055) - 649579..650007 (+) 429 WP_060691096.1 ExbD/TolR family protein -
  AOC04_RS03065 (AOC04_03060) lpxK 650007..651017 (+) 1011 WP_060691097.1 tetraacyldisaccharide 4'-kinase -
  AOC04_RS03070 (AOC04_03065) - 651043..651228 (+) 186 WP_003442540.1 Trm112 family protein -
  AOC04_RS03075 (AOC04_03070) kdsB 651225..651989 (+) 765 WP_060691098.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AOC04_RS03080 (AOC04_03075) - 651989..652453 (+) 465 WP_060691099.1 low molecular weight protein-tyrosine-phosphatase -
  AOC04_RS03085 (AOC04_03080) murB 652450..653469 (+) 1020 WP_060691100.1 UDP-N-acetylmuramate dehydrogenase -
  AOC04_RS03090 (AOC04_03085) - 653533..654144 (+) 612 WP_060691101.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22968.20 Da        Isoelectric Point: 7.3618

>NTDB_id=156235 AOC04_RS03055 WP_060696858.1 648947..649582(+) (exbB) [Pseudomonas versuta strain L10.10]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPPHLLGQVWVWIKDKQLDKEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDREVDMVGSRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=156235 AOC04_RS03055 WP_060696858.1 648947..649582(+) (exbB) [Pseudomonas versuta strain L10.10]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGCCTGTGGACCCTGCGTGCCAGTCGCGTGACTCCGCCTCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGGACAAGGAAAAACTCAAGCAATTGCGCGCCGACTCCCCGCTGGGCGAAATCCTGGCTGCGGGCCTGGCCAAC
TCCAGACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCTGCCAGGGTCATCCACGAGCTTGAGCGTTACCT
CAATGCCCTGGGTACCATTGCCGCAATGGCACCGCTGCTGGGCCTGTTGGGTACGGTTCTGGGCATGATCGATATCTTCA
GTTCATTCATGGGGTCTGGCATGACCACCAATGCTGCCGTGCTCGCGGGCGGTATTTCCAAAGCCCTGATTACCACCGCT
GCGGGCCTTATGGTCGGTATTCCGGCCGTGTTCTTCCATCGCTTCCTGCAGCGTCGGGTTGATGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTGCAAGGCGACCGTGAAGTCGACATGGTCGGGAGCAGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.379

97.63

0.853

Multiple sequence alignment