Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | RN86_RS04185 | Genome accession | NZ_CP012648 |
| Coordinates | 845957..846910 (+) | Length | 317 a.a. |
| NCBI ID | WP_053794328.1 | Uniprot ID | - |
| Organism | Streptococcus gordonii strain KCOM 1506 (= ChDC B679) | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 840957..851910
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RN86_RS04145 (RN86_04140) | - | 841751..842119 (+) | 369 | WP_046164737.1 | DUF1033 family protein | - |
| RN86_RS04150 (RN86_04145) | comYA | 842221..843159 (+) | 939 | WP_046164736.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RN86_RS04155 (RN86_04150) | comYB | 843092..844126 (+) | 1035 | WP_046164735.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| RN86_RS04160 (RN86_04155) | comYC | 844123..844440 (+) | 318 | WP_012130940.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RN86_RS04165 (RN86_04160) | comYD | 844400..844828 (+) | 429 | WP_069097080.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| RN86_RS04170 (RN86_04165) | comGE/cglE | 844800..845093 (+) | 294 | WP_046164733.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| RN86_RS04175 (RN86_04170) | comGF/cglF | 845077..845514 (+) | 438 | WP_053794327.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| RN86_RS04180 (RN86_04175) | comGG | 845495..845926 (+) | 432 | WP_253276489.1 | competence type IV pilus minor pilin ComGG | - |
| RN86_RS04185 (RN86_04180) | comYH | 845957..846910 (+) | 954 | WP_053794328.1 | class I SAM-dependent methyltransferase | Machinery gene |
| RN86_RS04190 (RN86_04185) | - | 846960..848150 (+) | 1191 | WP_045634156.1 | acetate kinase | - |
| RN86_RS04195 (RN86_04190) | - | 848197..848862 (+) | 666 | WP_053794329.1 | type II CAAX endopeptidase family protein | - |
| RN86_RS04200 (RN86_04195) | folP | 848939..849904 (+) | 966 | WP_053794330.1 | dihydropteroate synthase | - |
| RN86_RS04205 (RN86_04200) | - | 849906..851240 (+) | 1335 | WP_172672762.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36040.16 Da Isoelectric Point: 4.8014
>NTDB_id=156076 RN86_RS04185 WP_053794328.1 845957..846910(+) (comYH) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MNFEKIEEAYTLLLENVQVIQNKLSTNFYDALIEQNGIYLDGQTDLEIVKKNHQTLKSLKLSREEWRRAYQFILMKGAQT
EPLQANHQFTPDAIGFLLIFVIDQLMVASDITLLEMGSGTGNLAETILNNSQKEIDYLGLEIDDLLIDLSASIAEVMGSK
AHFAQGDAVRPQVLKESDLIISDLPVGYYPDDQIASRYQVASQTEHTYAHHLLMEQALKYLKVDGYAIFLAPNHLLTSPQ
SDLLKSWLKDNASLVAMIALPEKLFASVSQAKTVFVLQKQKNIKAEPFVYALEDLQNHEEITRFRESFQKWRKVSEN
MNFEKIEEAYTLLLENVQVIQNKLSTNFYDALIEQNGIYLDGQTDLEIVKKNHQTLKSLKLSREEWRRAYQFILMKGAQT
EPLQANHQFTPDAIGFLLIFVIDQLMVASDITLLEMGSGTGNLAETILNNSQKEIDYLGLEIDDLLIDLSASIAEVMGSK
AHFAQGDAVRPQVLKESDLIISDLPVGYYPDDQIASRYQVASQTEHTYAHHLLMEQALKYLKVDGYAIFLAPNHLLTSPQ
SDLLKSWLKDNASLVAMIALPEKLFASVSQAKTVFVLQKQKNIKAEPFVYALEDLQNHEEITRFRESFQKWRKVSEN
Nucleotide
Download Length: 954 bp
>NTDB_id=156076 RN86_RS04185 WP_053794328.1 845957..846910(+) (comYH) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGAATTTTGAAAAAATTGAAGAAGCCTATACGCTCCTTTTAGAAAATGTCCAAGTCATTCAAAACAAGCTTTCAACTAA
TTTTTATGATGCCTTAATTGAGCAAAATGGTATCTATTTGGATGGGCAAACGGACTTAGAAATTGTCAAAAAGAATCATC
AAACTTTGAAGAGCTTAAAGCTAAGCAGAGAAGAGTGGCGGAGAGCCTATCAGTTCATTCTGATGAAGGGTGCTCAGACA
GAGCCTTTGCAAGCCAATCATCAGTTTACACCAGATGCCATTGGTTTTCTGCTGATTTTCGTCATTGACCAGCTGATGGT
AGCATCAGATATTACTCTTCTTGAGATGGGAAGTGGAACCGGAAATCTTGCAGAGACAATCCTGAACAATAGTCAGAAAG
AGATTGATTATCTAGGATTAGAAATCGATGATTTACTGATTGATCTATCTGCTAGTATTGCAGAAGTGATGGGTTCAAAG
GCACATTTTGCCCAGGGAGATGCTGTGCGCCCTCAAGTTCTAAAAGAGAGCGACTTGATCATCAGCGATTTGCCTGTCGG
TTACTATCCGGATGATCAGATTGCCAGTCGCTATCAGGTAGCCAGTCAGACAGAGCACACCTATGCTCATCATCTGTTGA
TGGAGCAGGCATTAAAGTATTTAAAGGTTGATGGCTATGCGATCTTCTTAGCTCCTAATCACCTCTTAACCAGCCCGCAG
AGTGACTTGCTTAAATCCTGGCTCAAAGACAATGCCAGCTTAGTAGCAATGATTGCTTTGCCAGAAAAACTCTTTGCATC
TGTCTCTCAGGCTAAGACGGTTTTTGTTCTGCAAAAACAAAAAAATATAAAAGCAGAACCTTTTGTCTATGCATTGGAAG
ATCTACAAAATCATGAAGAAATTACTCGCTTCCGCGAAAGTTTTCAAAAATGGCGCAAAGTTAGTGAAAACTGA
ATGAATTTTGAAAAAATTGAAGAAGCCTATACGCTCCTTTTAGAAAATGTCCAAGTCATTCAAAACAAGCTTTCAACTAA
TTTTTATGATGCCTTAATTGAGCAAAATGGTATCTATTTGGATGGGCAAACGGACTTAGAAATTGTCAAAAAGAATCATC
AAACTTTGAAGAGCTTAAAGCTAAGCAGAGAAGAGTGGCGGAGAGCCTATCAGTTCATTCTGATGAAGGGTGCTCAGACA
GAGCCTTTGCAAGCCAATCATCAGTTTACACCAGATGCCATTGGTTTTCTGCTGATTTTCGTCATTGACCAGCTGATGGT
AGCATCAGATATTACTCTTCTTGAGATGGGAAGTGGAACCGGAAATCTTGCAGAGACAATCCTGAACAATAGTCAGAAAG
AGATTGATTATCTAGGATTAGAAATCGATGATTTACTGATTGATCTATCTGCTAGTATTGCAGAAGTGATGGGTTCAAAG
GCACATTTTGCCCAGGGAGATGCTGTGCGCCCTCAAGTTCTAAAAGAGAGCGACTTGATCATCAGCGATTTGCCTGTCGG
TTACTATCCGGATGATCAGATTGCCAGTCGCTATCAGGTAGCCAGTCAGACAGAGCACACCTATGCTCATCATCTGTTGA
TGGAGCAGGCATTAAAGTATTTAAAGGTTGATGGCTATGCGATCTTCTTAGCTCCTAATCACCTCTTAACCAGCCCGCAG
AGTGACTTGCTTAAATCCTGGCTCAAAGACAATGCCAGCTTAGTAGCAATGATTGCTTTGCCAGAAAAACTCTTTGCATC
TGTCTCTCAGGCTAAGACGGTTTTTGTTCTGCAAAAACAAAAAAATATAAAAGCAGAACCTTTTGTCTATGCATTGGAAG
ATCTACAAAATCATGAAGAAATTACTCGCTTCCGCGAAAGTTTTCAAAAATGGCGCAAAGTTAGTGAAAACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
58.786 |
98.738 |
0.58 |
| comYH | Streptococcus mutans UA140 |
58.786 |
98.738 |
0.58 |