Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RN86_RS03025 Genome accession   NZ_CP012648
Coordinates   647026..647790 (-) Length   254 a.a.
NCBI ID   WP_045504981.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 642026..652790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS03005 (RN86_03000) - 643438..643956 (+) 519 WP_045504988.1 YehR family protein -
  RN86_RS03010 (RN86_03005) - 643975..644178 (-) 204 WP_008808039.1 DUF951 family protein -
  RN86_RS03015 (RN86_03010) dnaN 644178..645314 (-) 1137 WP_008808038.1 DNA polymerase III subunit beta -
  RN86_RS03020 (RN86_03015) dnaA 645470..646822 (-) 1353 WP_053794273.1 chromosomal replication initiator protein DnaA -
  RN86_RS03025 (RN86_03020) spo0J 647026..647790 (-) 765 WP_045504981.1 ParB/RepB/Spo0J family partition protein Regulator
  RN86_RS03030 (RN86_03025) htrA 647856..649049 (-) 1194 WP_045504979.1 S1C family serine protease Regulator
  RN86_RS03035 (RN86_03030) rlmH 649243..649722 (+) 480 WP_008808034.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RN86_RS11220 comC/comC1 650008..650172 (+) 165 WP_080998577.1 bacteriocin Regulator
  RN86_RS03050 (RN86_03045) comD/comD2 650185..651546 (+) 1362 WP_052721528.1 competence system sensor histidine kinase ComD Regulator
  RN86_RS03055 (RN86_03050) comE/comE2 651543..652310 (+) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29362.08 Da        Isoelectric Point: 9.3006

>NTDB_id=156056 RN86_RS03025 WP_045504981.1 647026..647790(-) (spo0J) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MENYQYILIKDIHTNPYQPRKDFSIEKLNELANSIKENGLIQPIIVRKSSIIGYELLAGERRFRAAKIAGLTEIPALVKS
LSDDEMMKQAIIENLQREDLNPIEEAESYQHLIYKGLTHDEIAQIMGKSRPYITNLVRLLQLPDFVLKEVKEGHISQAHA
RLLIKLKEKDQKKWLEKIISSDISVRKLEKLLQTSPTKPKSENVQKIFIEEEEENLKKLLGVDVKISLSKKQTGKISISF
SNQEEYERIINSLK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=156056 RN86_RS03025 WP_045504981.1 647026..647790(-) (spo0J) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGGAAAATTATCAATATATTTTAATTAAAGATATTCACACCAACCCCTATCAACCAAGAAAAGATTTTTCAATAGAGAA
ATTAAACGAGTTAGCAAATTCTATTAAAGAAAACGGATTAATTCAGCCTATCATCGTCAGGAAATCATCTATCATTGGAT
ACGAACTTTTAGCTGGGGAAAGAAGATTTAGGGCAGCTAAAATAGCAGGCTTAACTGAAATTCCTGCCTTAGTCAAATCA
CTAAGCGATGATGAAATGATGAAGCAGGCTATTATTGAAAATCTTCAAAGAGAGGATCTCAATCCAATAGAAGAAGCTGA
ATCTTATCAGCATCTTATTTACAAGGGATTAACGCATGATGAAATCGCTCAGATTATGGGGAAATCAAGGCCTTATATTA
CAAATCTTGTTCGTTTGCTACAGCTACCTGATTTTGTCTTAAAAGAGGTCAAAGAAGGTCATATTTCTCAGGCTCATGCT
CGATTATTAATAAAACTTAAGGAAAAAGACCAGAAAAAATGGCTTGAAAAAATTATTTCTTCAGATATTTCTGTTAGAAA
ATTAGAGAAATTATTACAGACTTCTCCTACTAAGCCTAAGTCTGAAAATGTCCAAAAAATTTTTATCGAAGAAGAAGAAG
AAAATCTAAAGAAATTATTGGGAGTTGATGTAAAGATTAGTCTCTCTAAGAAACAAACTGGCAAAATCTCAATTTCTTTT
TCTAATCAGGAAGAATATGAAAGAATTATTAACAGTCTTAAATAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

53.937

100

0.539

Multiple sequence alignment