Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RN80_RS07370 Genome accession   NZ_CP012646
Coordinates   1504389..1506356 (-) Length   655 a.a.
NCBI ID   WP_060628498.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1499389..1511356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS07335 (RN80_07350) - 1500026..1500220 (-) 195 WP_001081602.1 DUF3272 domain-containing protein -
  RN80_RS07340 (RN80_07355) dnaX 1500248..1501903 (-) 1656 WP_060628496.1 DNA polymerase III subunit gamma/tau -
  RN80_RS07345 (RN80_07360) - 1501903..1502400 (-) 498 WP_060628497.1 GAF domain-containing protein -
  RN80_RS07350 (RN80_07365) rpsA 1502486..1503688 (-) 1203 WP_001001631.1 30S ribosomal protein S1 -
  RN80_RS07365 (RN80_07380) - 1504061..1504291 (-) 231 WP_000037113.1 DUF2969 domain-containing protein -
  RN80_RS07370 (RN80_07385) amiA3 1504389..1506356 (-) 1968 WP_060628498.1 peptide ABC transporter substrate-binding protein Regulator
  RN80_RS07375 (RN80_07390) - 1506379..1507401 (-) 1023 WP_060628499.1 branched-chain amino acid aminotransferase -
  RN80_RS07380 (RN80_07395) parC 1507537..1510008 (-) 2472 WP_080998524.1 DNA topoisomerase IV subunit A -
  RN80_RS07385 (RN80_07400) - 1510061..1510795 (-) 735 WP_060628500.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72756.45 Da        Isoelectric Point: 5.1322

>NTDB_id=156031 RN80_RS07370 WP_060628498.1 1504389..1506356(-) (amiA3) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MKSKKWLLTAGVVLSTTALLVACGKADKEADAPTTFSYVYAVDPASLDYSVATRTSTTDVIGNVVDGLMENDQYGNVIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVSLIQNSIKGLDAYMTGETNDFSTVG
IKALDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLKASGKDYGAVTPAGILYNGPYILKTLTSKSLIEYEKNPNYWDK
EKVKIEKIKLTYYDGSDQESLIRSFSSGAYTTARLFPSSSNFASTLEQYGDKITYSPQDSSSYYFTFNVNRQSYNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQAGGKNFGQIAQAELVNYGDQWKGVE
LVDGKDSIYNPDKAKVAFEKAKKDLESKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGAENVVIDVLQMTDNEKE
TITSQARVPSQKDYDLNSTGWAPSYQDPASYLNIMDPKSGSAMKHLGIIKGKDKDVVAKLGLDQYKKLLDDADSETTNLE
ERYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMKLQKDIVTTKEYEEALKKWQKEKL
ESNGKYQKELEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=156031 RN80_RS07370 WP_060628498.1 1504389..1506356(-) (amiA3) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGAAATCGAAAAAGTGGCTCTTAACAGCAGGAGTAGTCCTGAGCACAACAGCTCTTTTAGTGGCTTGTGGAAAAGCTGA
TAAAGAAGCAGATGCACCGACAACATTTTCATATGTCTATGCAGTAGATCCAGCGTCTTTGGACTATAGTGTAGCGACTC
GTACATCTACAACAGATGTCATCGGGAATGTGGTTGATGGATTGATGGAAAATGACCAATACGGAAATGTTATTCCTTCC
TTGGCTGAAGATTGGTCTGTGTCCAAAGATGGTTTGACTTATACCTATAAACTTCGTAAAGGAGTTAAATGGTACACTTC
TGAGGGTGAAGAATATGCAGAAGTAACAGCCCATGACTTTGTAACAGGACTAAAACACGTAGCTGACGGTAAGTCAGACG
GTGTCTCTCTCATCCAAAATTCAATCAAGGGCTTGGATGCCTACATGACTGGTGAGACTAATGATTTCTCTACAGTTGGT
ATCAAGGCTTTGGACGATTACACAGTTGAATATACCCTAAACAAACCAGAAAGCTTCTGGAACTCTAAAGTCACCACAGC
AACGATGTTGCCTGTAAATGAAGAGTTTTTGAAGGCATCAGGTAAAGATTATGGAGCAGTTACTCCAGCAGGAATTCTCT
ACAATGGTCCTTATATCTTGAAGACCTTGACGTCTAAATCGTTGATCGAATATGAGAAAAATCCAAATTACTGGGATAAA
GAAAAGGTAAAAATCGAAAAGATTAAATTGACTTACTACGATGGTTCTGATCAGGAATCGTTGATTCGTAGCTTCTCTTC
TGGTGCCTATACGACAGCCCGTCTCTTCCCAAGTAGCTCAAACTTTGCTTCTACTTTGGAACAATACGGAGATAAAATCA
CTTATAGCCCACAGGACTCAAGTAGTTATTACTTCACCTTTAACGTAAATCGTCAGTCATATAATAAAACTGCGAAAACA
AGTGAAGAACAAAAGACTTCTACAAAAGAAGCTATGCTTAATAAGGACTTCCGTCAGGCTATCAACTTTGCCTTCAACCG
CCATTCTTATGCTGCCCAGCTAAATGGTGAAGACGGTGCGGACAAGATTATTCGTAACAGTCTCGTTCCAGATAACTTTG
TGCAAGCAGGTGGTAAAAACTTTGGTCAAATCGCTCAAGCAGAGTTGGTGAACTATGGTGACCAATGGAAAGGTGTTGAG
CTAGTTGACGGTAAGGATTCTATCTACAACCCTGACAAGGCTAAAGTTGCGTTCGAAAAAGCTAAGAAAGACTTGGAATC
TAAAGGGGTAACTTTCCCAATTCACTTGGATGTCCCAGTTGAACAAACAGATACCATCGCCGTTCAACAAAGCAACTCTT
TCAAACAGTCTATCGAATCAACTCTTGGTGCTGAAAATGTTGTCATCGATGTTCTTCAAATGACAGATAATGAAAAGGAA
ACAATCACTTCTCAAGCGCGTGTTCCTTCTCAAAAAGACTATGATTTGAACAGTACAGGATGGGCTCCAAGCTATCAAGA
CCCAGCATCTTACTTGAATATCATGGATCCTAAATCAGGTTCTGCTATGAAACACCTTGGTATTATTAAAGGGAAAGATA
AGGATGTCGTAGCGAAACTTGGTTTGGACCAATATAAGAAATTATTGGATGATGCAGATTCAGAAACTACAAATCTTGAA
GAACGCTATGAAAAATATGCCAAGGCTCAAGCTTGGTTGACAGATAGTTCATTATTGATGCCGACAGCCTCATCTGGTGG
TTCTCCAGTTGTAAGTAATGTCGTGCCATTCTCAAAACCATACTCACAAGTTGGTATTAAAGGTGACCCATATATCTTTA
AAGGAATGAAATTGCAAAAAGATATTGTTACAACAAAAGAATATGAAGAAGCACTGAAAAAATGGCAAAAAGAAAAATTG
GAATCAAATGGTAAGTACCAAAAAGAACTAGAAAAACACATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.727

100

0.531
  amiA Streptococcus salivarius strain HSISS4

52.28

100

0.525
  amiA3 Streptococcus thermophilus LMG 18311

52.121

100

0.525

Multiple sequence alignment