Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RN80_RS06070 Genome accession   NZ_CP012646
Coordinates   1238025..1238834 (+) Length   269 a.a.
NCBI ID   WP_060628228.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1233025..1243834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS06050 (RN80_06065) pta 1233580..1234554 (+) 975 WP_000451580.1 phosphate acetyltransferase -
  RN80_RS06055 (RN80_06070) mutY 1234743..1235918 (+) 1176 WP_060628224.1 A/G-specific adenine glycosylase -
  RN80_RS06060 (RN80_06075) micA 1235974..1236681 (+) 708 WP_049539286.1 response regulator YycF Regulator
  RN80_RS06065 (RN80_06080) micB 1236674..1238023 (+) 1350 WP_060628226.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RN80_RS06070 (RN80_06085) vicX 1238025..1238834 (+) 810 WP_060628228.1 MBL fold metallo-hydrolase Regulator
  RN80_RS06075 (RN80_06090) - 1238868..1239215 (-) 348 WP_060628229.1 PedC/BrcD family bacteriocin maturation disulfide isomerase -
  RN80_RS06080 (RN80_06095) - 1239326..1241044 (-) 1719 WP_060628231.1 phospho-sugar mutase -
  RN80_RS06085 (RN80_06100) abc-f 1241198..1243099 (+) 1902 WP_060628233.1 ribosomal protection-like ABC-F family protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29944.90 Da        Isoelectric Point: 6.1743

>NTDB_id=156026 RN80_RS06070 WP_060628228.1 1238025..1238834(+) (vicX) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MSETGFKYSILASGSSGNSFYLETPKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDSAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=156026 RN80_RS06070 WP_060628228.1 1238025..1238834(+) (vicX) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGAGTGAAACAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCCTTTTATCTGGAAACCCCAAAAAA
GAAACTTTTAGTGGATGCAGGCTTATCTGGTAAGAAAATCACCAGCCTACTTGCTGAAATAAATCGTAAACCAGAAGACT
TGGATGCCATCTTGATTACGCATGAGCATTCAGACCATATCCATGGTGTGGGTGTTTTGGCTCGCAAGTATGGTATGGAT
TTGTATGCTAATGAAAAGACCTGGCAGGCTATGGAAAATAGCAAGTATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
CTTTGAGATGGGCAAAACCAAAACCTTTGGAGATATTGACATCGAGAGTTTTGGCGTAAGCCATGATGCGGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTTAGTGACCGTATGGCGGGA
ATTGTCGAAAATGCGGATGGATATCTTATCGAGTCCAACCATGATGTAGAAATTTTGCGAGCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCGGATCTGGGTCACCTTTCTAACGAGGATAGTGCTGAAGCTATGATTCGGACCCTAGGAA
ATCGCACTAAGAAAATCTACCTTGGACATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCACATGACCATGGTCAAT
CAGCTAGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.695

100

0.777

Multiple sequence alignment