Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RN80_RS05450 Genome accession   NZ_CP012646
Coordinates   1117815..1119809 (+) Length   664 a.a.
NCBI ID   WP_060628026.1    Uniprot ID   A0A0M5KHL2
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1112815..1124809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS05430 (RN80_05445) - 1113779..1114657 (+) 879 WP_000301224.1 F0F1 ATP synthase subunit gamma -
  RN80_RS05435 (RN80_05450) atpD 1114743..1116149 (+) 1407 WP_049547270.1 F0F1 ATP synthase subunit beta -
  RN80_RS05440 (RN80_05455) - 1116160..1116579 (+) 420 WP_000068037.1 F0F1 ATP synthase subunit epsilon -
  RN80_RS05445 (RN80_05460) - 1116624..1117637 (-) 1014 WP_060628023.1 lactonase family protein -
  RN80_RS05450 (RN80_05465) amiA3 1117815..1119809 (+) 1995 WP_060628026.1 peptide ABC transporter substrate-binding protein Regulator
  RN80_RS05455 (RN80_05470) - 1119927..1121093 (+) 1167 WP_060628036.1 AI-2E family transporter -
  RN80_RS05460 (RN80_05475) - 1121083..1122312 (+) 1230 WP_060628038.1 tetratricopeptide repeat protein -
  RN80_RS05465 (RN80_05480) - 1122451..1123092 (+) 642 WP_060628040.1 amino acid ABC transporter permease -
  RN80_RS05470 (RN80_05485) - 1123102..1123731 (+) 630 WP_060628041.1 amino acid ABC transporter ATP-binding protein -
  RN80_RS05475 (RN80_05490) - 1123741..1124580 (+) 840 WP_060628043.1 amino acid ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 664 a.a.        Molecular weight: 73153.43 Da        Isoelectric Point: 5.0909

>NTDB_id=156022 RN80_RS05450 WP_060628026.1 1117815..1119809(+) (amiA3) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MKKRVFLAAGVAVLSAAVLVACSSGNGNKEATKQATKPVTYAYVFSLDPVTLDYTVSGNVSTKQITGNVIDGLLENDQYG
NLVPSVAEDWTVSKDGLTYTYKIRQGVKWYTNEGEEYGEVKAQDFVTGLKHAADKKSQALYLVQDSIKGLDDYVNGKTTD
FSTVGVKATDDYTVVYTLNHPESFWNSKTTMGVLAPVSGDFLASKGDDFGKTTDVTSILYNGPYLLKGLTSKSSIEMTKN
QNYWDKQNVFIDDIKLSFFDGQDADSLGRGFDEGHYPAAPLFKNSANYERLKEKYKDNIVYGQQRGGVFYMSTNIDRVSY
NHTAKTSDAEKSSTKKALLNKEFRQALAFAADRKAAVSQVFGDEVAPRKLRTSFTPPTFVQVGDQSFGQVTKTELDKLDN
VWKDVSLDDAQDSLHNVDKAKAKFESAKKTLQADGVQYPIHLDLPVSSTQTDFIHQAQSYKQSIEEALGSENVVVDIQQV
SDDELGNMTVLATSNNNVDWDINVNSGWSPDYADPSTYLDVFDPTSGPSLLGSLGVAPGTDNQAIKTVGLDKYKGLIDDA
NSEKTDLQKRYSKYAKAQAWLTDSALVIPVHSDGAQMLVTKKVLGSGADGWIGDKTGDNSYKYLKLQDKIVTSKEMDEFR
KKFADEKGKSNADYQKNLDRHIQD

Nucleotide


Download         Length: 1995 bp        

>NTDB_id=156022 RN80_RS05450 WP_060628026.1 1117815..1119809(+) (amiA3) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGAAAAAACGTGTTTTCTTAGCAGCAGGAGTTGCTGTACTCTCGGCAGCAGTGCTAGTAGCGTGTTCATCTGGTAATGG
TAATAAAGAAGCAACTAAACAAGCAACTAAACCAGTTACTTATGCCTATGTATTCTCATTAGATCCTGTTACTTTGGATT
ATACAGTTTCTGGTAATGTCAGCACTAAACAGATTACAGGTAATGTTATTGATGGATTATTAGAAAATGACCAATATGGG
AATCTGGTCCCATCAGTTGCAGAAGATTGGACTGTTTCCAAAGATGGTTTGACCTATACCTATAAAATCCGTCAGGGTGT
CAAGTGGTATACCAATGAGGGAGAGGAGTATGGTGAAGTTAAGGCTCAGGATTTTGTAACTGGTCTGAAGCATGCAGCTG
ATAAGAAATCACAGGCTCTCTATTTGGTACAGGATTCTATCAAAGGATTGGATGACTATGTAAATGGGAAAACAACAGAT
TTCTCAACCGTAGGTGTGAAAGCAACAGATGATTATACTGTTGTTTATACTTTGAACCATCCAGAATCTTTCTGGAATTC
AAAAACAACAATGGGAGTCCTTGCTCCCGTGAGTGGAGACTTTTTAGCTTCTAAAGGAGATGATTTTGGTAAGACCACTG
ATGTTACGAGCATTCTCTACAACGGTCCTTATCTCCTCAAGGGTCTTACATCTAAGTCTTCTATCGAAATGACTAAAAAC
CAAAATTATTGGGATAAGCAAAATGTCTTTATTGATGATATCAAGTTATCATTCTTTGATGGTCAAGATGCAGACTCTCT
AGGACGCGGTTTTGATGAGGGACATTATCCAGCTGCTCCACTCTTTAAAAACTCTGCCAACTATGAACGTCTAAAAGAAA
AATACAAGGATAATATTGTATATGGTCAACAAAGAGGTGGCGTCTTCTATATGTCTACTAATATTGATCGTGTGTCATAC
AATCATACTGCTAAAACAAGTGATGCAGAAAAATCATCTACAAAAAAAGCTTTGTTAAATAAAGAATTCCGTCAAGCTTT
GGCATTTGCTGCAGATCGTAAAGCAGCTGTTTCTCAGGTGTTTGGAGATGAAGTGGCACCTCGTAAACTACGTACAAGTT
TCACTCCTCCAACATTTGTACAAGTTGGAGACCAATCGTTTGGTCAAGTAACTAAGACAGAATTGGATAAATTGGATAAT
GTCTGGAAAGATGTCAGTCTTGATGATGCCCAAGATTCACTTCATAACGTAGACAAGGCTAAAGCTAAGTTTGAATCTGC
TAAGAAAACTCTTCAAGCTGATGGAGTGCAGTATCCGATTCATTTAGATCTTCCAGTTTCATCGACTCAGACAGATTTTA
TCCATCAAGCTCAGTCTTATAAACAATCCATTGAAGAAGCCTTGGGCTCTGAAAATGTAGTTGTTGATATTCAACAGGTT
TCTGATGATGAATTGGGAAACATGACTGTTCTAGCAACATCAAATAATAATGTTGATTGGGACATTAATGTTAATAGTGG
TTGGAGTCCGGATTATGCAGACCCATCAACTTATCTAGATGTATTTGATCCAACTTCAGGTCCAAGTCTCCTCGGCTCTC
TTGGTGTAGCACCAGGAACAGACAATCAAGCCATTAAAACAGTTGGATTGGATAAATACAAAGGATTGATTGATGATGCA
AATAGTGAAAAAACAGATCTGCAAAAACGTTATTCTAAATATGCTAAGGCGCAAGCTTGGTTAACAGATAGTGCTCTAGT
TATTCCTGTACACTCAGACGGTGCCCAAATGTTAGTAACGAAGAAAGTATTAGGTAGTGGTGCTGATGGTTGGATTGGTG
ACAAAACAGGAGATAACAGTTATAAATATCTTAAACTCCAAGATAAGATTGTCACTTCCAAAGAAATGGATGAGTTCCGC
AAGAAATTTGCTGATGAAAAAGGCAAATCCAATGCTGATTATCAGAAGAACTTAGACCGTCATATTCAAGACTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(82-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M5KHL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.054

100

0.542
  amiA3 Streptococcus thermophilus LMG 18311

53.604

100

0.538
  amiA Streptococcus salivarius strain HSISS4

53.534

100

0.536

Multiple sequence alignment