Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RN80_RS04570 Genome accession   NZ_CP012646
Coordinates   930451..932409 (+) Length   652 a.a.
NCBI ID   WP_060627810.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 925451..937409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS04545 (RN80_04570) - 925589..926101 (+) 513 WP_060627803.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  RN80_RS04550 (RN80_04575) - 926085..926735 (+) 651 WP_060627805.1 DUF1803 domain-containing protein -
  RN80_RS04555 (RN80_04580) - 926834..927025 (+) 192 WP_000051182.1 CsbD family protein -
  RN80_RS04560 (RN80_04585) - 927072..928517 (-) 1446 WP_060627806.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  RN80_RS04565 (RN80_04590) - 928623..930248 (+) 1626 WP_060627808.1 putative polysaccharide biosynthesis protein -
  RN80_RS04570 (RN80_04595) amiA 930451..932409 (+) 1959 WP_060627810.1 peptide ABC transporter substrate-binding protein Regulator
  RN80_RS04575 (RN80_04600) - 932724..933179 (+) 456 WP_060627812.1 hypothetical protein -
  RN80_RS04580 (RN80_04605) - 933344..934438 (+) 1095 WP_060627814.1 cystathionine gamma-synthase -
  RN80_RS04585 (RN80_04610) - 934446..935612 (+) 1167 WP_060627816.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72717.08 Da        Isoelectric Point: 4.9455

>NTDB_id=156018 RN80_RS04570 WP_060627810.1 930451..932409(+) (amiA) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MKKSKAKYATLAGIVLSAGILLSACGNSSTGSKTYNYVYSSDPSSLNYLAENRATTTDIVTNLVDGLMENDQYGNYVPSL
AEDWSVSKDGLTYTYKLRKDAKWYTSDGDEYAPVTAQDFVTGLKYAADKKSEALYLVQESVVGLDDYITGKTSDFSTVGV
KALDDQTVQYTLARPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYFDGSDQDALARNFTEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQDATSYFLNFNLDRKSYKFTSKTS
DAEKKSTQEAVLNKNFRQAINFAYDRTAYGAQSQGEEGATKILRNLVVPPTFVSINGKDFGEVVASKMVNYGKEWQGINF
ADAQDPYYNPEKAKAKFAEAKKELQAKGVQFPIHLDKTIDLANKAEIQGINSMKQSIESVLGADNVVIDVHQLSTEDYDS
SGYLAQTAAQKDYDLYNGGWTADYQDPSTYLDVFNVNSGGLMQNLGIEPGEANDKAKAVGLDVYTQMLEEANKEQDPAKR
YEKYADAQAWLVDSSLAIPNVSLGGTPTLRKIVPFSTPYSLAGNKGVESYKYLKLQDKTVTKDEYEKAKEKWLKEKEESN
KKAQEELAKHFK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=156018 RN80_RS04570 WP_060627810.1 930451..932409(+) (amiA) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGAAAAAGTCTAAGGCCAAGTATGCAACACTTGCAGGTATCGTGTTAAGTGCAGGTATTTTGTTAAGTGCGTGTGGAAA
TTCTAGCACAGGGTCAAAAACATATAATTATGTTTATTCAAGTGATCCATCTAGTTTGAACTATCTAGCAGAAAACCGTG
CAACAACTACTGATATTGTGACCAACCTGGTAGATGGTCTCATGGAAAATGACCAATATGGGAACTATGTCCCATCTTTG
GCAGAGGATTGGAGTGTTTCTAAGGACGGTTTGACCTATACCTACAAACTGCGGAAAGATGCTAAATGGTATACTTCAGA
TGGAGATGAATATGCTCCTGTAACTGCCCAAGATTTTGTCACTGGATTGAAATATGCGGCTGATAAAAAATCAGAAGCCT
TGTACTTAGTGCAAGAATCCGTTGTTGGTTTAGATGACTATATCACTGGTAAAACAAGCGACTTTTCAACTGTCGGAGTC
AAGGCTCTTGATGACCAAACCGTTCAATATACCTTGGCACGACCAGAACCTTACTGGAACTCAAAAACAACTTCAACCAT
TCTTTTCCCAGTTAATGCGGATTTCTTGAAATCAAAAGGGGATGATTTTGGGAAGGTAGACCCATCTAGCATTTTGTACA
ATGGACCTTTCTTGATGAAATCCTTTGTTTCAAAATCGGTCATCGAATACAAGAAAAATCCTAACTACTGGGATGCTAAA
AATGTCTTTGTAGATGATGTCAAATTGACTTATTTTGATGGTAGTGACCAAGATGCGTTAGCACGTAATTTTACCGAAGG
TGTTTATAGCTATGCTCGTCTCTATCCGAACAGTTCAAGTTTTGAAGGGATTAAAGAAAAGAATAAGGACAATATCATCT
ATAGCATGCAAGATGCTACTTCTTACTTCTTAAACTTCAACTTGGATAGAAAATCTTATAAATTTACTTCAAAAACAAGT
GATGCTGAGAAGAAGTCTACACAAGAAGCGGTTCTTAACAAAAACTTCCGTCAAGCCATTAACTTTGCTTATGACCGTAC
AGCCTACGGGGCTCAATCTCAGGGAGAAGAGGGTGCAACTAAGATTTTGCGTAACCTCGTCGTTCCTCCAACATTTGTAA
GTATCAATGGAAAAGACTTTGGTGAAGTAGTAGCCTCTAAGATGGTGAATTACGGTAAGGAATGGCAAGGAATCAACTTT
GCAGATGCCCAGGATCCATACTACAATCCAGAAAAAGCTAAAGCTAAATTTGCTGAAGCTAAGAAAGAACTCCAAGCCAA
AGGAGTCCAATTCCCTATACACTTAGATAAAACTATAGATTTGGCTAATAAGGCTGAAATTCAAGGAATCAATTCCATGA
AGCAATCAATAGAATCTGTCTTAGGTGCAGATAATGTTGTGATTGATGTTCATCAACTTTCTACAGAGGACTATGATAGT
TCAGGTTATCTCGCTCAAACTGCAGCTCAGAAGGATTATGATCTTTACAATGGTGGTTGGACTGCAGACTATCAAGATCC
TTCAACCTATCTTGATGTCTTTAACGTTAATTCTGGTGGTTTGATGCAAAATCTAGGTATAGAGCCAGGTGAAGCCAATG
ACAAAGCCAAGGCTGTTGGACTGGATGTCTACACTCAAATGTTGGAAGAAGCTAATAAGGAACAAGATCCAGCTAAACGT
TATGAAAAATATGCAGATGCCCAAGCTTGGTTGGTGGATAGCTCTTTAGCAATTCCAAATGTTTCACTTGGTGGAACACC
AACATTGAGAAAAATCGTTCCTTTCTCAACACCATATTCATTGGCTGGTAATAAAGGGGTTGAATCATATAAATATCTCA
AATTACAAGATAAGACAGTCACAAAAGATGAATATGAAAAAGCTAAAGAAAAATGGTTGAAAGAAAAAGAAGAATCCAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACATTTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.687

100

0.572
  amiA3 Streptococcus thermophilus LMG 18311

55.235

100

0.558
  amiA3 Streptococcus thermophilus LMD-9

55.083

100

0.557

Multiple sequence alignment