Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RN80_RS03645 Genome accession   NZ_CP012646
Coordinates   711830..713812 (+) Length   660 a.a.
NCBI ID   WP_060627565.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 706830..718812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS03635 (RN80_03645) - 708870..710315 (+) 1446 WP_049544888.1 LCP family protein -
  RN80_RS09650 - 710322..710429 (+) 108 Protein_667 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -
  RN80_RS03640 (RN80_03650) glf 710523..711626 (+) 1104 WP_060627563.1 UDP-galactopyranose mutase -
  RN80_RS03645 (RN80_03655) amiA3 711830..713812 (+) 1983 WP_060627565.1 peptide ABC transporter substrate-binding protein Regulator
  RN80_RS03650 (RN80_03660) pbp1a 713954..716116 (-) 2163 WP_060627567.1 penicillin-binding protein PBP1A -
  RN80_RS03655 (RN80_03665) recU 716113..716709 (-) 597 WP_000248751.1 Holliday junction resolvase RecU -
  RN80_RS03660 (RN80_03670) - 716776..717303 (+) 528 WP_060627569.1 SLOG family protein -
  RN80_RS03665 (RN80_03675) gpsB 717373..717702 (+) 330 WP_060627571.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73271.89 Da        Isoelectric Point: 4.7548

>NTDB_id=156009 RN80_RS03645 WP_060627565.1 711830..713812(+) (amiA3) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MKTRKVLALAGVTLLATGVLAACSGSGSSAKGEKTFSYVYETDPDNLNYLTTGKAATADITSNVIDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTIRKDAKWYTSEGEEYAPVKAQDFVTGLKYATDKKSEALYLVQDSIKGLDAYAKGETKDFSQVG
IKAIDDQTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFGKATDPSSILYNGPFLLKSLVAKSSVEFEKNPNYWD
KDNVHIDKVKLSFWDGQDTGKLAENFKDGSFTMARLFPTSASYPELEKEFKDNIVYTPQDSTTYLVGTNIDRQSYKYTSK
TTDEQKTSTKKALLNKDFRQALAFGFDRKAYASQVNGANGATKLLRNLFVPPTFVQADGKNFGEMVKDKLVTYGDEWSNV
NLDDAQDGLYNPEKAKAEFAKAKTALQAEGVQFPIHLDMPVDQTNTTKVQRVQSFKQSLEETLGTDNVVIDIQQLQKDEV
LNVTYFAETAAGQDWDVSDNVGWGPDYIDPSTYLDILKPSVGESTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGAEVN
DISKRYEKYAAAQAWLTDSALIIPTTSKTGRPMLSKMVPFTLPFAYSGNKGTTEATLYKYLDVQDKPVTVDEYQKAQDKW
MKEKAESNKKAQEELAKHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=156009 RN80_RS03645 WP_060627565.1 711830..713812(+) (amiA3) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGAAAACAAGAAAAGTATTGGCTCTTGCGGGAGTAACTTTATTAGCAACAGGTGTTTTAGCTGCTTGCTCTGGCTCAGG
GTCTAGTGCAAAAGGTGAGAAAACTTTTTCTTATGTTTACGAAACAGATCCAGATAACCTGAACTACTTGACAACTGGTA
AGGCAGCAACTGCTGACATTACTAGTAATGTGATTGATGGATTGCTTGAAAATGACCGCTATGGTAACTTTGTGCCATCT
ATGGCTGAGGATTGGTCTGTATCTAAGGACGGCTTGACTTACACTTATACAATCCGTAAAGATGCCAAGTGGTACACATC
TGAAGGAGAAGAGTATGCGCCTGTGAAAGCTCAAGACTTTGTAACAGGACTTAAGTATGCGACAGATAAGAAATCAGAAG
CCCTTTACTTGGTACAGGATTCAATTAAAGGTTTGGATGCATACGCTAAAGGGGAAACTAAAGATTTCTCTCAAGTTGGG
ATTAAAGCGATTGACGATCAAACAGTTCAATACACTTTGAACAAACCTGAAAGTTTTTGGAATTCTAAAACAACAATGGG
TGTCTTAGCACCAGTTAATGAAGAGTTTTTAAACTCTAAAGGAGATGATTTTGGGAAAGCAACAGATCCAAGCAGTATCC
TTTATAACGGACCTTTCTTGTTGAAATCATTGGTCGCTAAATCTTCAGTAGAATTTGAAAAGAATCCAAACTACTGGGAT
AAGGACAATGTTCACATTGATAAGGTAAAACTTTCATTCTGGGATGGTCAAGATACAGGAAAACTTGCAGAAAACTTCAA
AGATGGAAGCTTTACAATGGCTCGTCTCTTCCCGACAAGCGCAAGTTATCCTGAACTTGAAAAAGAGTTTAAAGACAACA
TCGTTTATACACCACAAGATTCTACTACTTATTTAGTAGGTACTAATATTGATCGCCAGTCTTATAAGTACACTTCTAAG
ACTACAGATGAACAAAAGACTTCAACCAAGAAAGCTCTTCTAAACAAAGATTTCCGTCAAGCCCTTGCCTTTGGTTTTGA
TAGAAAAGCCTATGCTTCTCAAGTGAATGGTGCGAATGGGGCAACTAAACTGCTTCGTAACTTGTTTGTTCCTCCTACAT
TTGTACAGGCAGATGGAAAGAACTTTGGCGAAATGGTCAAAGACAAATTGGTGACTTATGGTGACGAATGGAGCAACGTG
AACTTGGATGATGCTCAGGATGGACTCTACAATCCTGAAAAAGCGAAAGCAGAGTTTGCTAAAGCTAAGACAGCTCTCCA
AGCAGAAGGCGTTCAATTCCCAATCCACTTGGATATGCCAGTTGACCAAACCAATACAACAAAAGTTCAACGTGTCCAAT
CTTTTAAACAATCACTTGAAGAAACATTAGGAACTGACAATGTCGTCATTGATATCCAACAACTTCAAAAAGATGAAGTT
CTCAATGTTACCTACTTTGCTGAAACGGCTGCTGGACAAGATTGGGATGTCTCAGATAACGTTGGATGGGGACCAGACTA
CATTGACCCATCTACCTACCTTGATATTCTCAAACCATCTGTAGGGGAAAGTACAAAGACTTACCTAGGATTTGACTCTG
GAACAAACAACGCTGCGGCTAAGCAAGTTGGTTTGGAAGACTACGAAAAAATGGTTGTGGAAGCTGGTGCAGAAGTGAAT
GACATTTCAAAACGTTATGAAAAATATGCTGCTGCCCAAGCTTGGTTGACCGACAGTGCTTTGATTATCCCAACAACTTC
TAAAACTGGTCGTCCAATGTTGTCTAAGATGGTACCATTTACACTTCCGTTTGCATACTCTGGTAACAAGGGTACGACCG
AAGCTACCTTGTATAAATACCTTGATGTACAAGATAAACCAGTGACAGTTGATGAGTATCAAAAAGCGCAAGATAAATGG
ATGAAAGAAAAAGCAGAATCCAATAAAAAAGCGCAAGAAGAACTTGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.607

100

0.597
  amiA3 Streptococcus thermophilus LMG 18311

59.153

100

0.592
  amiA Streptococcus salivarius strain HSISS4

58.85

100

0.589

Multiple sequence alignment