Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RN80_RS00705 Genome accession   NZ_CP012646
Coordinates   128000..129964 (-) Length   654 a.a.
NCBI ID   WP_060627180.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 123000..134964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS00680 (RN80_00685) - 123350..124261 (-) 912 WP_060627175.1 helix-turn-helix domain-containing protein -
  RN80_RS00685 (RN80_00690) rnmV 124333..124893 (-) 561 WP_060627176.1 ribonuclease M5 -
  RN80_RS00690 (RN80_00695) - 124893..125666 (-) 774 WP_060627177.1 TatD family hydrolase -
  RN80_RS00695 (RN80_00700) - 125824..127668 (+) 1845 WP_060627178.1 APC family permease -
  RN80_RS00705 (RN80_00710) amiA3 128000..129964 (-) 1965 WP_060627180.1 peptide ABC transporter substrate-binding protein Regulator
  RN80_RS00710 (RN80_00715) rpmH 130101..130235 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  RN80_RS00715 (RN80_00720) - 130380..131594 (-) 1215 WP_060627181.1 pyridoxal phosphate-dependent aminotransferase -
  RN80_RS00720 (RN80_00725) - 131751..132053 (-) 303 WP_060627182.1 hypothetical protein -
  RN80_RS00725 (RN80_00730) - 132215..132667 (+) 453 WP_000079148.1 universal stress protein -
  RN80_RS00735 (RN80_00740) - 132804..134195 (-) 1392 WP_060627183.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 73045.20 Da        Isoelectric Point: 4.7145

>NTDB_id=155971 RN80_RS00705 WP_060627180.1 128000..129964(-) (amiA3) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MKKSKVMLFGAMALTAGLALAACGSSQSTNADKTYSYIFVSNPDTLDYITSTRDSTSSITTNLIDGLLENDQYGNLIPSM
AESWTVSKDGLTYTYKIRQGAKWYTSEGEEYADVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGRTSDFGTVGV
KAVDDYTLQYTLIQPETYWNSKTTASILNPVNEAFLKSKGDDFGSVTPSSILSNGPYLFKSFSSKSLIEFDKNPNYWDKD
KVKIEKVKLSFFDGSDQDSIARGFLDGNYTDGSIFPTSSVFAELKKGNEDKITYTPQNSVTFYYLFNVNRQSYKQTMKQS
DKEKTDSRAAMQNKDFRQAINFAFDRHAYAAQTNGEDGADRILRNTVTPSNFVQVGDKNFGDIVNEKIVNYGKDWANINL
NDGKQAFLNPDKAKEKFAKAKESLQAQGVTFPIHLDMPVDQTAKLDVQQAGSFKQTVEETLGKENVVIDVIQLSPDEKDQ
ATYFADTAEQKDYDIDISGWGGDYSDPKTYLAILDSETGSQLKNMGLSEGKDKEVKDKIGLADYKKLLDQADAEITDTQA
RYEKYAEAQAWLTDSALFLPVQSGGANPIFRKTIPFTGPFSFVGHKGDADNYKYVELQKEPVTAKQYQELYEKWLKEKAE
SNKKAQEDLANHIQ

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=155971 RN80_RS00705 WP_060627180.1 128000..129964(-) (amiA3) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGAAGAAATCAAAAGTTATGCTTTTTGGAGCTATGGCTTTGACAGCAGGTCTAGCTCTAGCGGCATGTGGGTCTTCCCA
ATCAACTAATGCAGACAAGACTTACTCTTATATCTTTGTTAGCAACCCAGATACCTTGGATTATATTACCTCTACACGAG
ACTCAACATCTAGTATCACAACCAACTTGATTGATGGGTTGTTGGAAAATGACCAGTATGGTAATCTCATCCCATCTATG
GCTGAGTCATGGACAGTGTCAAAAGATGGTTTGACCTACACTTATAAAATCCGTCAGGGGGCTAAATGGTACACTTCTGA
AGGAGAAGAGTATGCAGATGTAACGGCTCATGACTTTGTGACTGGTCTCAAGTATGCGGCTGATAAAAAGGCTGAAAACT
TGTACTTGGTACAAGACTCTATCAAGGGTCTAGCAGACTATGTTGAAGGGAGAACATCTGATTTTGGAACTGTTGGTGTT
AAGGCAGTGGATGATTACACACTACAATACACCCTCATCCAACCTGAAACTTATTGGAACTCTAAAACAACAGCAAGTAT
CCTTAATCCTGTAAATGAAGCCTTCTTGAAGTCTAAGGGAGATGACTTTGGAAGTGTAACACCATCAAGTATCTTGTCAA
ATGGTCCTTACTTGTTTAAATCTTTCTCATCAAAATCTTTGATTGAGTTTGATAAAAACCCTAATTACTGGGATAAGGAC
AAGGTCAAAATTGAGAAAGTGAAACTTTCTTTCTTTGACGGTTCTGACCAAGACAGCATTGCTAGAGGTTTCTTGGATGG
TAACTATACTGATGGCAGTATCTTCCCAACAAGCTCAGTATTTGCTGAACTCAAGAAGGGAAATGAGGACAAGATTACCT
ATACACCGCAAAACTCAGTTACTTTCTACTATCTTTTCAATGTAAACCGCCAAAGCTACAAGCAGACTATGAAACAGTCT
GATAAGGAAAAGACAGATTCACGCGCGGCTATGCAAAATAAAGATTTCCGTCAGGCTATCAACTTTGCCTTTGATCGTCA
TGCTTATGCAGCACAGACAAATGGTGAAGATGGAGCAGACCGTATCTTGCGTAACACAGTTACACCAAGTAACTTTGTCC
AAGTTGGCGATAAGAACTTTGGTGACATTGTCAATGAAAAAATTGTCAACTACGGTAAAGATTGGGCAAATATTAACCTA
AACGATGGTAAGCAAGCCTTCTTGAACCCTGACAAGGCCAAAGAGAAATTTGCGAAGGCCAAAGAAAGCCTGCAAGCACA
GGGAGTAACCTTCCCAATTCATTTGGATATGCCAGTTGACCAGACTGCTAAGTTGGATGTGCAACAGGCTGGATCTTTTA
AACAAACAGTGGAAGAAACCCTTGGTAAGGAGAATGTGGTTATCGATGTTATCCAACTTTCTCCGGATGAAAAAGACCAG
GCAACTTACTTTGCAGATACAGCAGAACAAAAAGACTACGATATCGACATCTCAGGATGGGGAGGAGACTACTCAGATCC
TAAGACTTACCTAGCGATCCTTGATTCAGAGACAGGTTCTCAGTTGAAAAATATGGGCTTGTCTGAAGGAAAAGACAAGG
AAGTCAAGGACAAGATTGGTCTTGCTGACTACAAGAAACTCTTGGATCAGGCTGATGCGGAAATCACAGATACTCAAGCT
CGCTACGAAAAATATGCTGAAGCCCAAGCTTGGTTGACAGATAGCGCCTTGTTCCTACCAGTTCAAAGTGGTGGAGCCAA
CCCAATCTTCCGTAAGACTATACCGTTTACAGGACCATTCTCATTCGTTGGACACAAAGGAGATGCAGACAACTATAAAT
ATGTTGAATTGCAAAAAGAGCCAGTAACTGCTAAACAGTACCAAGAACTCTATGAAAAATGGCTAAAAGAAAAAGCTGAG
TCAAATAAAAAAGCTCAGGAAGATTTAGCTAACCATATTCAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.559

100

0.549
  amiA Streptococcus salivarius strain HSISS4

54.559

100

0.549
  amiA3 Streptococcus thermophilus LMG 18311

54.255

100

0.546

Multiple sequence alignment