Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   LLUC08_RS08480 Genome accession   NZ_CP015903
Coordinates   1744131..1745501 (-) Length   456 a.a.
NCBI ID   WP_081199988.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC08     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1739131..1750501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC08_RS08465 (LLUC08_1643) - 1740304..1741737 (-) 1434 WP_081199986.1 6-phospho-beta-glucosidase -
  LLUC08_RS08470 (LLUC08_1644) yidD 1741858..1742124 (-) 267 WP_015426859.1 membrane protein insertion efficiency factor YidD -
  LLUC08_RS08475 (LLUC08_1645) - 1742241..1743983 (-) 1743 WP_010906088.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LLUC08_RS08480 (LLUC08_1646) ciaH 1744131..1745501 (-) 1371 WP_081199988.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LLUC08_RS08485 (LLUC08_1647) ciaR 1745594..1746262 (-) 669 WP_021722129.1 response regulator transcription factor Regulator
  LLUC08_RS08490 (LLUC08_1648) - 1746440..1747414 (-) 975 WP_081199990.1 LacI family DNA-binding transcriptional regulator -
  LLUC08_RS08495 (LLUC08_1649) - 1747567..1749822 (-) 2256 WP_003130366.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 51281.85 Da        Isoelectric Point: 9.4537

>NTDB_id=155887 LLUC08_RS08480 WP_081199988.1 1744131..1745501(-) (ciaH) [Lactococcus lactis subsp. lactis strain UC08]
MKKIIKKVKSSAIVKNDGKNFLHFFLAFTVIFVALAVIIIQVMQLGMYRATDQNLHNLAQNRVFLIEAANNQLGMNNSQD
SGYYGPNNSVIFYDSEGKSFIPSAGSNANISTNFGMNLLQKTMKFNENQINTIQTVSVKNPYGDNLHYRYLTTSQFIITN
TDGTVTPVYAQIFSNVDQIQDAMSRAMWVIVTTMITFWLLSVIISLYLANWTLKPILAAYEKQKEFVENASHELRTPLAI
LQNRLELLFQKPTATIIDESENISESLSEVRNMRLLTSNLLNLARRDSGIRIEPEATTATYFENIFNSYEMLAENAGKKF
SGHLKLDGTINLDQALIKQLLTILFDNALKYTGDEGEISVDVQKNGGFLVFAVADNGEGISDEDKKKIFDRFFRVDKART
RQKGGLGLGLSLAKQIVEAYNGKITVEDNKPKGTKFIVRIRVDNTISNPAKIFQKL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=155887 LLUC08_RS08480 WP_081199988.1 1744131..1745501(-) (ciaH) [Lactococcus lactis subsp. lactis strain UC08]
TTGAAGAAAATAATTAAAAAAGTTAAATCTTCAGCTATTGTAAAAAATGATGGGAAAAATTTCCTTCATTTTTTTCTAGC
TTTTACAGTCATTTTTGTTGCTTTAGCCGTGATTATTATTCAAGTCATGCAATTAGGAATGTATCGAGCGACTGACCAAA
ATTTACACAATTTGGCTCAAAACCGAGTCTTTTTGATAGAAGCAGCGAATAATCAATTAGGAATGAATAATTCGCAAGAT
AGTGGCTATTACGGTCCCAATAATAGTGTAATTTTTTATGATTCAGAGGGTAAAAGTTTCATACCTTCAGCGGGTTCAAA
TGCTAATATAAGTACAAACTTTGGCATGAACCTTCTGCAAAAAACAATGAAATTTAACGAAAATCAAATTAATACTATTC
AAACTGTTTCTGTAAAAAATCCTTATGGAGATAATTTGCACTATCGTTATCTGACAACATCACAATTTATTATTACAAAT
ACTGATGGAACAGTAACTCCGGTTTATGCACAAATTTTTTCAAATGTTGACCAAATTCAAGATGCCATGAGCCGAGCCAT
GTGGGTCATTGTGACAACAATGATTACTTTCTGGCTTCTGTCAGTAATTATTAGTCTATATCTTGCAAACTGGACATTAA
AACCAATTTTGGCCGCTTATGAAAAACAAAAAGAATTTGTTGAAAATGCTTCACATGAATTGAGAACACCTCTGGCAATC
TTGCAAAATCGTCTAGAATTACTTTTCCAAAAGCCAACAGCAACAATTATTGATGAATCAGAAAATATTTCTGAAAGTTT
ATCAGAAGTTCGTAATATGCGTTTATTAACAAGTAACTTACTGAACTTAGCTCGTCGAGATTCTGGAATCAGAATTGAGC
CAGAGGCGACTACGGCAACTTATTTTGAGAATATTTTTAATAGCTATGAAATGCTTGCTGAAAACGCAGGTAAAAAGTTT
TCAGGCCATTTGAAATTAGATGGAACGATTAATTTGGACCAAGCCCTGATTAAACAATTGCTAACCATCTTATTTGATAA
TGCTCTTAAATACACGGGTGATGAGGGTGAAATCTCTGTAGATGTTCAAAAAAATGGGGGATTCTTAGTTTTTGCTGTCG
CCGATAATGGTGAAGGAATTTCTGATGAAGATAAGAAAAAAATCTTTGACCGCTTTTTCCGAGTAGATAAAGCAAGAACG
CGTCAAAAGGGTGGCTTAGGTTTGGGTCTTTCTCTGGCCAAACAAATTGTTGAAGCTTACAATGGGAAGATTACAGTTGA
AGATAATAAACCTAAAGGTACAAAATTCATTGTTAGAATTCGTGTGGATAACACAATTTCAAATCCTGCAAAAATTTTCC
AAAAGTTGTAA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(223-289)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(333-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

48.14

94.298

0.454
  ciaH Streptococcus pneumoniae Rx1

44.543

98.465

0.439
  ciaH Streptococcus pneumoniae D39

44.543

98.465

0.439
  ciaH Streptococcus pneumoniae R6

44.543

98.465

0.439
  ciaH Streptococcus pneumoniae TIGR4

44.543

98.465

0.439