Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   LLUC06_RS12675 Genome accession   NZ_CP015902
Coordinates   2536277..2538277 (-) Length   666 a.a.
NCBI ID   WP_081213779.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2531277..2543277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC06_RS12650 (LLUC06_2454) - 2531748..2532362 (+) 615 WP_010906406.1 TetR/AcrR family transcriptional regulator -
  LLUC06_RS12655 (LLUC06_2455) - 2532441..2533169 (-) 729 WP_033899257.1 pseudouridine synthase -
  LLUC06_RS12660 (LLUC06_2456) - 2533265..2533900 (-) 636 WP_003132036.1 hypothetical protein -
  LLUC06_RS12665 (LLUC06_2457) mnmE 2534112..2535479 (+) 1368 WP_058203837.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  LLUC06_RS12670 (LLUC06_2458) - 2535531..2536277 (-) 747 WP_033899254.1 hypothetical protein -
  LLUC06_RS12675 (LLUC06_2459) recG/mmsA 2536277..2538277 (-) 2001 WP_081213779.1 ATP-dependent DNA helicase RecG Machinery gene
  LLUC06_RS12680 (LLUC06_2460) - 2538415..2538759 (-) 345 WP_010906411.1 zinc ribbon domain-containing protein YjdM -
  LLUC06_RS12685 (LLUC06_2461) gap 2538829..2539839 (-) 1011 WP_003131244.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  LLUC06_RS12690 (LLUC06_2462) - 2540118..2540639 (-) 522 WP_003131246.1 DUF536 domain-containing protein -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 74876.59 Da        Isoelectric Point: 5.8208

>NTDB_id=155833 LLUC06_RS12675 WP_081213779.1 2536277..2538277(-) (recG/mmsA) [Lactococcus lactis subsp. lactis strain UC06]
MKLTDSVQFLKGVGPKSVENFHKLGIFTVQDLLLYFPFRYEDFASRSVFELVDGEKATIIGTVVTPANVQYYGFKRNRLS
FKIKEGEAVVAVSFFNQPYLADKVEVGKEIAVYGKWEQAKQQLMGMKVVAQVDDGLEPVYHLTAGMKQSQLVKVIHQVFE
SDLLSELPENLPEFLIKKYRLMNRQEAVLAMHFPEDMEAHKQALRRVKFEELFMFQLKLQALKNKEKSGRAGLEVVFEQG
EIDQKISELPFELTGAQLSALSEILTDMKSPYHMNRLLQGDVGSGKTVVASLAMYAACLANFQAAIMVPTEILARQHFAN
LKALFPELQISLLVSGLKVAERREILADLVSGHTHMVVGTHALIQEGVDFYNLGLVITDEQHRFGVNQRKILREKGQNPD
VLMMTATPIPRTLAITAFGDMDVSIIDELPKGRQPITTRWVKHEQFSEVLSWIKAEVAKDSQVYFISPLIEESETLDLKN
AEALFAELNEYFGLFAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVIMDADRFGLSQLHQLR
GRVGRGTKKSYAILVANPKSDSGKQRMKIMTETQNGFILAEEDLKMRGSGEIFGLRQSGVPEFIAADLVNDYNILEVTRK
EAVEIFKNADEFPDLIAQVNVDGGFD

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=155833 LLUC06_RS12675 WP_081213779.1 2536277..2538277(-) (recG/mmsA) [Lactococcus lactis subsp. lactis strain UC06]
ATGAAATTAACAGATTCAGTGCAATTTTTAAAAGGTGTGGGACCGAAATCTGTGGAAAATTTCCATAAGTTAGGAATTTT
CACGGTTCAAGATTTATTGCTTTATTTCCCTTTTCGTTATGAAGATTTCGCAAGTCGTTCGGTTTTTGAACTTGTTGACG
GAGAAAAAGCAACAATTATTGGAACGGTAGTGACACCAGCTAATGTCCAGTATTACGGATTTAAACGTAATCGACTTTCA
TTTAAAATTAAAGAAGGTGAGGCCGTGGTTGCTGTCAGCTTTTTTAATCAACCTTATTTGGCTGACAAAGTGGAAGTTGG
TAAGGAAATTGCAGTTTACGGAAAATGGGAGCAGGCAAAGCAACAACTGATGGGGATGAAGGTTGTGGCTCAGGTGGACG
ATGGCTTAGAACCTGTTTATCATTTGACAGCTGGTATGAAACAAAGTCAATTGGTCAAAGTAATTCATCAGGTTTTTGAA
TCAGACCTTCTATCAGAATTACCTGAGAACTTACCAGAATTTTTGATTAAAAAATATCGTCTGATGAACCGGCAAGAAGC
CGTTTTGGCTATGCATTTTCCTGAAGATATGGAAGCTCATAAGCAGGCTTTACGTCGTGTAAAATTTGAAGAATTATTCA
TGTTTCAGTTGAAATTACAGGCCTTAAAAAATAAAGAAAAGTCGGGCCGAGCAGGATTAGAAGTTGTTTTTGAGCAAGGA
GAAATTGATCAGAAGATTTCTGAATTACCTTTTGAACTGACAGGTGCTCAATTAAGCGCTTTGTCAGAGATTCTGACGGA
TATGAAATCTCCTTATCACATGAATCGACTTTTGCAAGGTGATGTGGGTTCTGGTAAAACAGTTGTTGCTTCCCTTGCCA
TGTACGCGGCTTGTTTGGCGAATTTTCAAGCAGCAATTATGGTACCAACGGAAATCCTTGCCCGTCAGCATTTTGCAAAC
TTGAAAGCTCTTTTTCCAGAATTGCAAATTTCACTTTTGGTTTCGGGTTTGAAAGTGGCAGAGCGCCGCGAGATTTTGGC
TGATTTAGTTAGTGGTCATACACATATGGTAGTTGGAACTCATGCACTAATTCAAGAAGGGGTCGATTTTTATAATTTGG
GCCTTGTGATTACAGATGAACAACACCGTTTCGGAGTTAATCAGCGAAAAATTTTACGAGAAAAAGGGCAAAATCCAGAT
GTTCTAATGATGACAGCTACACCTATTCCAAGAACGCTTGCGATTACGGCTTTTGGGGATATGGATGTTTCAATTATTGA
TGAACTACCCAAGGGACGTCAACCCATTACTACAAGGTGGGTCAAACATGAACAATTTTCCGAAGTTTTAAGTTGGATAA
AAGCAGAGGTTGCTAAAGATTCACAGGTTTATTTTATTTCACCTTTAATTGAGGAAAGTGAAACGTTGGACCTGAAAAAC
GCAGAAGCTCTTTTTGCGGAATTAAATGAATACTTTGGATTATTTGCCAAAATTGGTCTTTTACATGGAAAAATGAAAAA
TGATGAAAAAGACCAAATCATGCAAGAATTTAAGGCTAAAAAATTAGATATTTTGGTTTCAACAACAGTGATTGAAGTGG
GAGTTGATGTTCCTAATGCTACCATTATGGTGATTATGGATGCTGACCGCTTTGGACTTTCGCAGCTTCACCAATTGCGT
GGTCGTGTTGGTCGGGGAACAAAAAAATCTTATGCCATTTTAGTAGCAAATCCTAAGTCCGATTCAGGAAAACAACGGAT
GAAAATTATGACAGAAACACAAAATGGTTTTATTTTAGCCGAAGAAGATTTGAAAATGCGTGGTTCTGGAGAGATTTTTG
GACTTCGTCAGTCAGGAGTTCCAGAATTTATTGCGGCTGATTTAGTCAATGATTATAATATTTTAGAAGTGACTAGAAAA
GAAGCAGTTGAAATTTTTAAAAATGCAGATGAGTTTCCTGATTTGATTGCTCAAGTTAATGTTGACGGGGGCTTTGATTG
A

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(456-566)

RecG wedge domain (RecG_wedge)

(7-157)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-651)

DEAD/DEAH box helicase (DEAD)

(257-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

65.736

96.847

0.637
  recG/mmsA Streptococcus pneumoniae R36A

65.736

96.847

0.637
  recG Bacillus subtilis subsp. subtilis str. 168

50.543

96.847

0.489
  recG Neisseria meningitidis strain C311

40.181

99.399

0.399