Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AMQ28_RS10110 Genome accession   NZ_CP012608
Coordinates   2133028..2133660 (-) Length   210 a.a.
NCBI ID   WP_053579490.1    Uniprot ID   A0A0M4GZK2
Organism   Acinetobacter sp. TTH0-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2128028..2138660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMQ28_RS10075 (AMQ28_10080) mlaE 2128322..2129098 (+) 777 WP_053579484.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  AMQ28_RS10080 (AMQ28_10085) - 2129098..2129766 (+) 669 WP_053579485.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AMQ28_RS10085 (AMQ28_10090) - 2129786..2130418 (+) 633 WP_053579486.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  AMQ28_RS10090 (AMQ28_10095) - 2130425..2130724 (+) 300 WP_416202163.1 STAS domain-containing protein -
  AMQ28_RS10095 (AMQ28_10100) - 2130840..2131853 (-) 1014 WP_053579488.1 CorA family divalent cation transporter -
  AMQ28_RS10100 (AMQ28_10105) - 2132008..2132598 (+) 591 WP_053580295.1 TIGR00730 family Rossman fold protein -
  AMQ28_RS10105 (AMQ28_10110) - 2132601..2133008 (+) 408 WP_053579489.1 NUDIX hydrolase -
  AMQ28_RS10110 (AMQ28_10115) comF 2133028..2133660 (-) 633 WP_053579490.1 ComF family protein Machinery gene
  AMQ28_RS10115 (AMQ28_10120) recG 2133924..2135969 (-) 2046 WP_053579491.1 ATP-dependent DNA helicase RecG -
  AMQ28_RS10120 (AMQ28_10125) - 2136004..2136804 (+) 801 WP_053579492.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24294.41 Da        Isoelectric Point: 8.9009

>NTDB_id=155771 AMQ28_RS10110 WP_053579490.1 2133028..2133660(-) (comF) [Acinetobacter sp. TTH0-4]
MFNLIHQLLNKSIHGLSSCILCGIDRQQHHSLCQDCWQQLPWLKSSVQRQEIDIQVACHYSYPMDRIIQKYKYEQQLQFQ
RLLAETLIALHLPKVQAIVPMPISAPRLAERGYNQSLVIAKILAKHLNVPVWQPISRSDQHSQKGLTRLERIENIEQQFE
ICTRSKLRYRRVLMLDDVVTTGSSLYALKQKLEVLGCQKIYAACLACATD

Nucleotide


Download         Length: 633 bp        

>NTDB_id=155771 AMQ28_RS10110 WP_053579490.1 2133028..2133660(-) (comF) [Acinetobacter sp. TTH0-4]
ATGTTCAATCTTATTCATCAACTGCTCAACAAAAGCATACATGGCCTTTCATCTTGCATTCTGTGTGGCATAGACCGACA
ACAACACCATTCACTCTGTCAGGATTGCTGGCAACAACTGCCTTGGTTGAAATCAAGTGTGCAAAGACAGGAAATAGATA
TTCAAGTTGCCTGCCATTATAGCTACCCGATGGATCGTATTATTCAAAAATACAAATATGAACAACAATTACAGTTTCAG
CGTTTACTGGCCGAAACATTGATTGCACTCCACCTTCCGAAAGTACAAGCAATTGTTCCTATGCCTATTTCGGCTCCGCG
TTTAGCAGAACGTGGTTATAACCAATCTTTAGTCATTGCAAAAATTTTGGCAAAACATCTTAATGTTCCCGTTTGGCAAC
CCATTTCAAGATCAGACCAACACTCACAAAAAGGCTTAACCCGACTAGAACGAATTGAAAATATTGAACAACAATTTGAA
ATTTGCACACGTTCAAAGCTTCGTTATCGACGAGTACTCATGCTCGACGATGTGGTCACCACGGGAAGCTCTCTGTACGC
GTTAAAACAAAAACTAGAAGTTCTCGGTTGCCAAAAAATTTATGCGGCATGTCTTGCCTGTGCAACAGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4GZK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.026

92.857

0.567
  comF Acinetobacter baumannii D1279779

60.513

92.857

0.562

Multiple sequence alignment