Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   AMQ28_RS04165 Genome accession   NZ_CP012608
Coordinates   872008..872391 (-) Length   127 a.a.
NCBI ID   WP_053578507.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 867008..877391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMQ28_RS04150 (AMQ28_04155) - 868958..871030 (-) 2073 WP_053578504.1 methyl-accepting chemotaxis protein -
  AMQ28_RS04155 (AMQ28_04160) - 871073..871609 (-) 537 WP_053578505.1 chemotaxis protein CheW -
  AMQ28_RS04160 (AMQ28_04165) - 871616..871984 (-) 369 WP_053578506.1 response regulator -
  AMQ28_RS04165 (AMQ28_04170) pilG 872008..872391 (-) 384 WP_053578507.1 twitching motility response regulator PilG Regulator
  AMQ28_RS04170 (AMQ28_04175) - 872668..873309 (+) 642 WP_053578508.1 hypothetical protein -
  AMQ28_RS04175 (AMQ28_04180) - 873445..874488 (+) 1044 WP_416202174.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14256.36 Da        Isoelectric Point: 4.5657

>NTDB_id=155743 AMQ28_RS04165 WP_053578507.1 872008..872391(-) (pilG) [Acinetobacter sp. TTH0-4]
MDDKFQNLKVMVIDDSKTIRLTAETLLQREGFEVVTAVDGFEALSKIAEVNPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVTA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=155743 AMQ28_RS04165 WP_053578507.1 872008..872391(-) (pilG) [Acinetobacter sp. TTH0-4]
ATGGACGATAAATTCCAAAATCTAAAAGTCATGGTAATTGATGATTCAAAAACGATTCGCCTTACTGCAGAAACATTATT
ACAGCGTGAAGGATTTGAAGTAGTCACAGCAGTAGACGGTTTTGAGGCATTATCAAAAATTGCAGAAGTTAATCCTGATA
TTGTATTTGTCGATATCATGATGCCACGCTTAGACGGTTATCAAACGTGTGCATTAATTAAAAACTCTCAAAATTATCAA
AATATTCCTGTGATTATGTTATCGAGTAAAGATGGCTTATTTGATCAGGCGAAAGGTCGGGTTGTTGGTTCAGATGAGTA
TTTAACCAAACCTTTTAGTAAAGACGAATTATTAAATGCAATTCGAAATCACGTCACCGCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

93.701

100

0.937
  vicR Streptococcus mutans UA159

41.88

92.126

0.386
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37

Multiple sequence alignment