Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AMQ28_RS02360 Genome accession   NZ_CP012608
Coordinates   479456..480163 (+) Length   235 a.a.
NCBI ID   WP_053578185.1    Uniprot ID   A0A1C4GWR3
Organism   Acinetobacter sp. TTH0-4     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 474456..485163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMQ28_RS02350 (AMQ28_02355) clpB 475851..478433 (-) 2583 WP_053578183.1 ATP-dependent chaperone ClpB -
  AMQ28_RS02355 (AMQ28_02360) - 478885..479307 (-) 423 WP_053578184.1 OsmC family protein -
  AMQ28_RS02360 (AMQ28_02365) crp 479456..480163 (+) 708 WP_053578185.1 cAMP-activated global transcriptional regulator CRP Regulator
  AMQ28_RS02365 (AMQ28_02370) - 480370..481419 (+) 1050 WP_053578186.1 NADP(H)-dependent aldo-keto reductase -
  AMQ28_RS02370 (AMQ28_02375) - 481568..482344 (-) 777 WP_053578187.1 M48 family metallopeptidase -
  AMQ28_RS02375 (AMQ28_02380) - 482458..482766 (-) 309 WP_053578188.1 hypothetical protein -
  AMQ28_RS02380 (AMQ28_02385) - 482956..484275 (-) 1320 WP_053578189.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26417.12 Da        Isoelectric Point: 4.6838

>NTDB_id=155739 AMQ28_RS02360 WP_053578185.1 479456..480163(+) (crp) [Acinetobacter sp. TTH0-4]
MTANFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTAIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANSQRTAEVRTRDVCEIAEISYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETEGKAILIFDVASEEIDSSLIKDEDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=155739 AMQ28_RS02360 WP_053578185.1 479456..480163(+) (crp) [Acinetobacter sp. TTH0-4]
ATGACTGCAAACTTTTCACAACTCAGTACAGACGCCCTTTCTCCTGGTCAATTACCAGAGTCTGTTAAAGCATTGTTAAA
ACGTGCCTATATTAACCGCTACCCAAAGCGCACTGCGATTGTAGATGCAGGAACTGAATCTAAATCACTGTATTTAATTT
TAAAAGGTTCAGTTTCTATTATTCTACGTGAAGATGATGAGCGTGAAATTGTGGTTGCCTATTTAAATGCAGGGGATTTT
TTTGGGGAAATGGGCCTATTTGAAGCTAACTCACAACGTACTGCCGAAGTTCGCACACGTGACGTATGTGAAATTGCTGA
AATAAGCTATGAAAATTTCCATGAATTGAGCAAACAGTATCCCGATTTAAGCTATGCCGTTTTTGCACAGCTCGTACGTC
GCTTAAAAAATACCACACGTAAAGTGACTGACCTTGCATTTATCGATGTATCTGGACGTATTGCACGCTGTTTAATCGAC
CTTTCATCTCAACCTGAAGCTATGATTTTACCCAATGGTCGTCAAATTCGGATTACGCGTCAAGAAATTGGCCGTATTGT
CGGCTGTTCACGCGAAATGGTCGGACGTGTTTTAAAAACGCTTGAAGAACAAGGCATGATCGAAACAGAAGGCAAAGCCA
TTCTTATTTTTGATGTGGCTTCAGAAGAGATAGATTCTTCCCTCATTAAAGATGAGGATGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-220)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4GWR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

90.987

99.149

0.902
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4

Multiple sequence alignment