Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AN158_RS07140 Genome accession   NZ_CP012587
Coordinates   1554766..1555506 (-) Length   246 a.a.
NCBI ID   WP_069370509.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CA-17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1549766..1560506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN158_RS07120 (AN158_07115) aroB 1550347..1551429 (-) 1083 WP_069370507.1 3-dehydroquinate synthase -
  AN158_RS07125 (AN158_07120) aroK 1551458..1552027 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AN158_RS07130 (AN158_07125) pilQ 1552039..1554165 (-) 2127 WP_069370508.1 type IV pilus secretin PilQ family protein Machinery gene
  AN158_RS07135 (AN158_07130) pilP 1554228..1554755 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AN158_RS07140 (AN158_07135) pilO 1554766..1555506 (-) 741 WP_069370509.1 type 4a pilus biogenesis protein PilO Machinery gene
  AN158_RS07145 (AN158_07140) pilN 1555503..1556144 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  AN158_RS07150 (AN158_07145) pilM 1556144..1557202 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AN158_RS07155 (AN158_07150) ponA 1557364..1559919 (+) 2556 WP_005137336.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27849.61 Da        Isoelectric Point: 4.8357

>NTDB_id=155559 AN158_RS07140 WP_069370509.1 1554766..1555506(-) (pilO) [Acinetobacter baumannii strain CA-17]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTSKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=155559 AN158_RS07140 WP_069370509.1 1554766..1555506(-) (pilO) [Acinetobacter baumannii strain CA-17]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAGGATAACAAGTCTGATATTCCTGTACTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAAGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679

Multiple sequence alignment