Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AN158_RS07145 Genome accession   NZ_CP012587
Coordinates   1555503..1556144 (-) Length   213 a.a.
NCBI ID   WP_000201224.1    Uniprot ID   A0A009T8N7
Organism   Acinetobacter baumannii strain CA-17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1550503..1561144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN158_RS07125 (AN158_07120) aroK 1551458..1552027 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AN158_RS07130 (AN158_07125) pilQ 1552039..1554165 (-) 2127 WP_069370508.1 type IV pilus secretin PilQ family protein Machinery gene
  AN158_RS07135 (AN158_07130) pilP 1554228..1554755 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AN158_RS07140 (AN158_07135) pilO 1554766..1555506 (-) 741 WP_069370509.1 type 4a pilus biogenesis protein PilO Machinery gene
  AN158_RS07145 (AN158_07140) pilN 1555503..1556144 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  AN158_RS07150 (AN158_07145) pilM 1556144..1557202 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AN158_RS07155 (AN158_07150) ponA 1557364..1559919 (+) 2556 WP_005137336.1 penicillin-binding protein PBP1a -
  AN158_RS07160 (AN158_07155) - 1559937..1560761 (-) 825 WP_002125608.1 putative RNA methyltransferase -
  AN158_RS07165 (AN158_07160) - 1560764..1561096 (-) 333 WP_000169602.1 DUF7709 family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24029.39 Da        Isoelectric Point: 5.3968

>NTDB_id=155560 AN158_RS07145 WP_000201224.1 1555503..1556144(-) (pilN) [Acinetobacter baumannii strain CA-17]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=155560 AN158_RS07145 WP_000201224.1 1555503..1556144(-) (pilN) [Acinetobacter baumannii strain CA-17]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTTATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T8N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704

Multiple sequence alignment