Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   A8140_RS01330 Genome accession   NZ_CP015863
Coordinates   267648..269729 (-) Length   693 a.a.
NCBI ID   WP_005529123.1    Uniprot ID   -
Organism   Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 262648..274729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8140_RS01320 (A8140_01250) - 263786..265177 (-) 1392 WP_005529120.1 uracil-xanthine permease family protein -
  A8140_RS01325 (A8140_01255) - 265430..267415 (-) 1986 WP_005529122.1 alpha/beta hydrolase family protein -
  A8140_RS01330 (A8140_01260) recG 267648..269729 (-) 2082 WP_005529123.1 ATP-dependent DNA helicase RecG Machinery gene
  A8140_RS01335 (A8140_01265) trmH 270018..270701 (-) 684 WP_005529125.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  A8140_RS01340 (A8140_01270) spoT 270755..272875 (-) 2121 WP_005434453.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  A8140_RS01345 (A8140_01275) rpoZ 272915..273187 (-) 273 WP_005379346.1 DNA-directed RNA polymerase subunit omega -
  A8140_RS01350 (A8140_01280) gmk 273351..273974 (-) 624 WP_005529128.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76723.68 Da        Isoelectric Point: 8.2082

>NTDB_id=155411 A8140_RS01330 WP_005529123.1 267648..269729(-) (recG) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
MSAQMLSAVPLTSLSGVGAKVAEKLAKVGLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMAVDTTFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSNGKLVHAYGEIKRGGMGLEIVHPDYKFYVSEQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALSLLDKAAVQELLPSGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIIEELLAQNLSMLAVR
SKGQQDVALPLALCNSLKKQLLAQLPFSPTNAQARVVKEIEADLEKTHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFERMGIQVGWLAGKLKGKAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARYIHDNYPTNATAIIDRWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=155411 A8140_RS01330 WP_005529123.1 267648..269729(-) (recG) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
ATGTCTGCCCAAATGTTATCTGCTGTTCCTTTAACCTCTCTGTCTGGAGTTGGCGCTAAAGTCGCAGAAAAACTCGCCAA
AGTTGGCTTGCATAGCGTTCAAGATCTACTGTTTCATCTTCCTCTTCGTTACGAAGATCGCACTCGCATTTACCCAATCG
CCAAACTGCATGCCGGGCTCTGGGCGGCGGTACAAGGCAAAGTCATGGCTGTCGATACTACTTTCGGCAAACGCAAAATG
CTGACGGTAAAAATCAGTGACGGCAATGGCACCATTACTCTACGCTTTTTTAACTTTACTGCCGCGATGAAGAACAATTT
CTCGAATGGTAAGTTAGTACACGCTTACGGTGAAATTAAGCGTGGCGGTATGGGCTTAGAAATTGTTCACCCTGACTACA
AGTTTTATGTAAGTGAGCAAAAGCCGGATGTGGAACAGAGCTTAACCCCCGTTTATCCAACCACCGATGGGTTACGCCAA
ATCACTTTGCGTAACCTGACGGAGCAAGCCTTATCACTCCTCGATAAAGCCGCAGTACAAGAGTTGCTGCCTTCCGGTTT
GTACAATCACCAGATCACCATGTCGCAAGCGCTGCATACGATTCATCGACCGCCTCCAACCATTAATTTGGATGAGTTTG
ATGAAGGTAAACATCCAGCTCAAATTCGGTTGATCATAGAAGAGTTACTGGCACAGAACCTCTCTATGCTGGCAGTGCGC
AGCAAAGGACAACAGGACGTTGCATTACCTTTGGCGTTGTGTAACTCGCTGAAAAAGCAACTACTAGCTCAATTGCCTTT
CTCACCGACCAATGCCCAAGCACGAGTCGTCAAAGAAATTGAAGCTGACTTAGAAAAAACGCACCCAATGATGCGCCTTG
TTCAAGGTGACGTAGGCTCGGGGAAAACTTTAGTTGCCGCACTCGCAGCAGTCAGAGCCATTGAACACGGCTATCAAGTC
GCTTTAATGGCACCGACCGAGCTACTCGCCGAACAGCACGCGATTAACTTCGCTAATTGGTTCGAGAGAATGGGCATTCA
GGTCGGTTGGCTGGCGGGCAAATTGAAAGGTAAAGCCAAAGAAGCCGAACTAGCCCGAATTGCCAGTGGTGAAGCACAAA
TGGTAGTGGGCACTCACGCCCTTTTCCAAGAGCATGTTGAGTTTCATCATCTTGCTTTGGTCATTATTGATGAACAGCAC
CGCTTTGGTGTCCACCAGCGCTTAGAGCTACGCGAGAAAGGCGCGAAACAAGGCGCTTATCCACATCAGCTCATCATGAC
AGCAACACCGATTCCGCGAACGTTAGCCATGACAGCTTATGCTGATTTAGAAACGTCGGTGATTGATGAGTTACCACCGG
GTCGAACACCAATCCAGACGGTCGCGATTCCAGACACCAAACGCGATGATATCGTCGAACGAGTGCGCAATGCTTGCTTA
AACGAAGGCAAGCAAGCGTATTGGGTATGTACCTTGATTGATGAGTCCGAAGTCTTGGAGGCTCAAGCTGCTGCTGACAC
TGCAGAAGAGCTGCAACGTAAACTGCCTGACGTAAAAATTGGTCTAGTGCACGGACGAATGAAGCCCGCAGAAAAACAAG
CGGTGATGCAGGATTTCAAAGACAACAAGCTGCATTTGCTGGTCGCAACGACGGTGATTGAAGTGGGCGTGGACGTGCCC
AATTCCAGTTTGATGATCATCGAGAACCCAGAGCGCTTAGGTTTAGCTCAGTTGCACCAGTTGAGAGGTCGTGTTGGTCG
AGGTTCAGTGGCGAGCCATTGTGTGTTGTTGTATCACTCACCACTATCAAAAACCGCCCAAAAACGTTTAGGCGTATTAC
GTGAAAGCAACGACGGCTTCGTGATTGCACAGAAAGACTTAGAGATTCGTGGACCGGGTGAGCTTCTTGGTACCAAACAA
ACTGGCTTGGCAGATTTTAAAATTGCCGACTTAGTGCGAGATCAGCGCTTGATTCCGGAAGTTCAACGCATCGCGCGTTA
CATTCATGACAACTACCCAACGAATGCGACAGCAATTATTGACCGTTGGTTAGGTGAGCGTGACATTTACTCTAAGGCGT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(271-433)

RecG wedge domain (RecG_wedge)

(15-172)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.554

96.97

0.481
  recG/mmsA Streptococcus pneumoniae R6

39.822

97.114

0.387
  recG/mmsA Streptococcus pneumoniae R36A

39.822

97.114

0.387
  recG Bacillus subtilis subsp. subtilis str. 168

39.422

94.805

0.374