Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CCAL_RS03215 Genome accession   NZ_CP012545
Coordinates   610080..610862 (+) Length   260 a.a.
NCBI ID   WP_170016475.1    Uniprot ID   A0AAW3ZXY8
Organism   Campylobacter californiensis strain RM6914     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 605080..615862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCAL_RS03200 (CCAL_0626) - 606831..607649 (-) 819 WP_169936409.1 HDOD domain-containing protein -
  CCAL_RS03205 (CCAL_0627) ilvC 607795..608817 (+) 1023 WP_170016479.1 ketol-acid reductoisomerase -
  CCAL_RS03210 (CCAL_0628) - 608821..610083 (+) 1263 WP_172285051.1 divergent polysaccharide deacetylase family protein -
  CCAL_RS03215 (CCAL_0629) dprA 610080..610862 (+) 783 WP_170016475.1 DNA-processing protein DprA Machinery gene
  CCAL_RS03220 (CCAL_0630) dprB 610859..611242 (+) 384 WP_170016473.1 Holliday junction resolvase RuvX Machinery gene
  CCAL_RS03225 (CCAL_0631) - 611228..612073 (-) 846 WP_170016471.1 hypothetical protein -
  CCAL_RS03230 (CCAL_0632) queA 612070..613092 (-) 1023 WP_170016469.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CCAL_RS03235 (CCAL_0633) tatC 613089..613832 (-) 744 WP_169936423.1 twin-arginine translocase subunit TatC -
  CCAL_RS03240 (CCAL_0634) tatB 613832..614302 (-) 471 WP_169936425.1 Sec-independent protein translocase protein TatB -
  CCAL_RS03245 (CCAL_0635) hemW 614372..615418 (-) 1047 WP_170016467.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28326.03 Da        Isoelectric Point: 8.3034

>NTDB_id=155076 CCAL_RS03215 WP_170016475.1 610080..610862(+) (dprA) [Campylobacter californiensis strain RM6914]
MKILAKDKFISKLDRLTNPPKELYYEGDIDLLTMPKVAVVGSRKASVYTKECVARLCASLKNHNVCVVSGGALGVDIAAH
KAAMPLTIGVFATGLDTFYPSSNAKFIKEIYDKGLALSEYSPGSPAIGYKFLERNRIVVALSQALVVAQADLKSGSMQSA
RLAGELGVPVFVLPQRMGESEGTNMLLAKGKAKLINDFDEFSSQFGLCLNKTPAQNDDILEFCKDFVSLEKALAKFGDKI
YEYELEGLVEIINLKVKSKI

Nucleotide


Download         Length: 783 bp        

>NTDB_id=155076 CCAL_RS03215 WP_170016475.1 610080..610862(+) (dprA) [Campylobacter californiensis strain RM6914]
ATGAAAATTCTGGCAAAAGATAAATTTATAAGTAAGTTAGATAGGCTTACAAATCCTCCAAAAGAGCTTTACTATGAGGG
TGATATAGATCTTTTAACCATGCCAAAAGTAGCGGTTGTGGGCTCAAGAAAAGCCAGTGTCTATACAAAAGAGTGCGTTG
CTAGACTTTGTGCAAGTCTTAAAAACCATAATGTTTGCGTGGTAAGCGGAGGTGCACTGGGCGTCGATATAGCTGCACAT
AAAGCTGCCATGCCCTTAACGATCGGAGTTTTTGCGACTGGGCTTGATACCTTTTATCCTAGTTCAAATGCAAAATTTAT
AAAAGAAATTTATGATAAGGGGCTAGCACTAAGCGAATACAGCCCAGGCTCGCCTGCCATAGGATATAAATTTCTTGAGC
GTAACCGCATAGTAGTCGCTCTCTCGCAAGCTCTTGTGGTAGCCCAGGCAGACTTAAAAAGCGGCTCCATGCAAAGCGCC
AGACTTGCCGGAGAGCTTGGCGTTCCGGTATTTGTCCTGCCTCAACGAATGGGTGAAAGCGAGGGGACAAATATGCTTTT
AGCAAAAGGTAAGGCAAAACTGATAAATGATTTTGATGAATTTTCTTCGCAATTTGGACTTTGTCTAAACAAAACGCCTG
CACAAAATGATGATATTTTAGAATTTTGCAAAGACTTTGTTTCGCTTGAAAAGGCACTTGCAAAATTTGGCGATAAAATT
TACGAATACGAATTGGAAGGCTTAGTGGAGATTATAAATTTAAAGGTAAAAAGTAAGATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(4-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.777

96.538

0.538
  dprA Helicobacter pylori 26695

47.131

93.846

0.442

Multiple sequence alignment