Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CCAL_RS03220 Genome accession   NZ_CP012545
Coordinates   610859..611242 (+) Length   127 a.a.
NCBI ID   WP_170016473.1    Uniprot ID   A0AAW3ZYD0
Organism   Campylobacter californiensis strain RM6914     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 605859..616242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCAL_RS03200 (CCAL_0626) - 606831..607649 (-) 819 WP_169936409.1 HDOD domain-containing protein -
  CCAL_RS03205 (CCAL_0627) ilvC 607795..608817 (+) 1023 WP_170016479.1 ketol-acid reductoisomerase -
  CCAL_RS03210 (CCAL_0628) - 608821..610083 (+) 1263 WP_172285051.1 divergent polysaccharide deacetylase family protein -
  CCAL_RS03215 (CCAL_0629) dprA 610080..610862 (+) 783 WP_170016475.1 DNA-processing protein DprA Machinery gene
  CCAL_RS03220 (CCAL_0630) dprB 610859..611242 (+) 384 WP_170016473.1 Holliday junction resolvase RuvX Machinery gene
  CCAL_RS03225 (CCAL_0631) - 611228..612073 (-) 846 WP_170016471.1 hypothetical protein -
  CCAL_RS03230 (CCAL_0632) queA 612070..613092 (-) 1023 WP_170016469.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CCAL_RS03235 (CCAL_0633) tatC 613089..613832 (-) 744 WP_169936423.1 twin-arginine translocase subunit TatC -
  CCAL_RS03240 (CCAL_0634) tatB 613832..614302 (-) 471 WP_169936425.1 Sec-independent protein translocase protein TatB -
  CCAL_RS03245 (CCAL_0635) hemW 614372..615418 (-) 1047 WP_170016467.1 radical SAM family heme chaperone HemW -
  CCAL_RS03250 (CCAL_0636) - 615517..615981 (+) 465 WP_170016465.1 RNA pyrophosphohydrolase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14159.27 Da        Isoelectric Point: 5.9207

>NTDB_id=155077 CCAL_RS03220 WP_170016473.1 610859..611242(+) (dprB) [Campylobacter californiensis strain RM6914]
MNEKFMAIDVGLKRIGVAFGVGQVVLPQEPILRKNRNQAARDVSQRVAEYGVNVLVVGLPLGGSSEDEMRRRIEHFVSLL
EFGGRIVYQDESLSSFEASEIYTDTKRDGKLDSMAAAVILKRYLEVV

Nucleotide


Download         Length: 384 bp        

>NTDB_id=155077 CCAL_RS03220 WP_170016473.1 610859..611242(+) (dprB) [Campylobacter californiensis strain RM6914]
ATGAATGAAAAATTTATGGCGATAGATGTTGGGCTTAAGCGGATAGGTGTTGCCTTTGGAGTAGGGCAAGTTGTTTTGCC
CCAAGAGCCCATACTTCGTAAAAATCGCAACCAAGCCGCTCGTGACGTGTCGCAAAGAGTTGCAGAGTATGGAGTAAATG
TTTTAGTTGTAGGCTTACCGCTTGGCGGAAGTAGTGAGGATGAGATGAGGCGTAGGATAGAACATTTTGTATCACTTCTT
GAATTTGGCGGGCGCATAGTCTATCAAGATGAGAGTTTAAGTAGTTTTGAGGCGAGTGAAATTTATACAGATACAAAGCG
CGACGGGAAGCTTGACAGCATGGCTGCTGCGGTTATACTTAAGCGATACTTAGAAGTTGTTTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(4-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

47.328

100

0.488

Multiple sequence alignment