Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AK823_RS00365 Genome accession   NZ_CP012529
Coordinates   81813..82712 (-) Length   299 a.a.
NCBI ID   WP_068325360.1    Uniprot ID   A0A7U4TI27
Organism   Psychrobacter sp. P2G3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 76813..87712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK823_RS00345 (AK823_00345) recN 77313..78992 (-) 1680 WP_068325357.1 DNA repair protein RecN -
  AK823_RS00350 (AK823_00350) - 79640..79975 (+) 336 WP_068033666.1 pyrimidine/purine nucleoside phosphorylase -
  AK823_RS00355 (AK823_00355) rlmB 80185..80955 (+) 771 WP_068033668.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AK823_RS00360 (AK823_00360) coaE 80918..81601 (-) 684 WP_068033670.1 dephospho-CoA kinase -
  AK823_RS00365 (AK823_00365) pilD 81813..82712 (-) 900 WP_068325360.1 A24 family peptidase Machinery gene
  AK823_RS00370 (AK823_00370) pilC 82720..83943 (-) 1224 WP_068033674.1 type II secretion system F family protein Machinery gene
  AK823_RS00375 (AK823_00375) pilB 84056..85765 (-) 1710 WP_068325362.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AK823_RS00380 (AK823_00380) tpiA 86212..87039 (+) 828 WP_068325365.1 triose-phosphate isomerase -
  AK823_RS00385 (AK823_00385) secG 87266..87574 (+) 309 WP_068033680.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33117.66 Da        Isoelectric Point: 8.4749

>NTDB_id=154985 AK823_RS00365 WP_068325360.1 81813..82712(-) (pilD) [Psychrobacter sp. P2G3]
MQLIELLQSNMTLALIVFAILGLCVGSFLNVVIHRIPLMMVYSWRQECNQFMSQQIDMPHKHTKALMDVTAKDTPITLSR
PASRCPHCAHKIKWYENIPLISWLVLRGRCSACDAAIDARYPIVELVTALLSALVIYQFGVTATGLSALVLVWTLIALTG
IDFDTQLLPDRLTFPLAGLGLAVNSQSWFVSPTQSIWGLLLGFLSLWIVVKVFYLITKKHGMGQGDFKLLAVLGAWLGPM
MLPLIILLSSLLGSIVGIILMKRHGESQPFAFGPYIAVAGIVALLYGSDIVNWYLNMYV

Nucleotide


Download         Length: 900 bp        

>NTDB_id=154985 AK823_RS00365 WP_068325360.1 81813..82712(-) (pilD) [Psychrobacter sp. P2G3]
ATGCAATTGATAGAATTATTACAAAGTAATATGACCTTGGCGCTAATAGTATTTGCGATATTAGGCCTTTGTGTAGGTAG
TTTTTTGAATGTAGTGATTCATCGTATACCGCTAATGATGGTTTATAGCTGGCGACAAGAATGTAACCAGTTTATGTCTC
AGCAAATAGATATGCCGCATAAGCATACTAAAGCTCTGATGGACGTTACTGCAAAGGATACGCCTATCACTTTGAGTAGA
CCAGCGTCACGTTGCCCTCACTGCGCGCACAAAATTAAATGGTATGAAAATATACCGTTAATAAGCTGGCTAGTACTACG
TGGACGCTGCTCTGCTTGTGACGCTGCAATCGATGCACGTTATCCTATTGTGGAGCTTGTCACTGCACTATTATCAGCAT
TGGTTATCTACCAATTCGGTGTTACTGCTACTGGGTTGTCTGCTCTTGTGCTGGTATGGACGCTTATTGCCTTAACAGGC
ATCGATTTTGATACTCAGCTATTACCTGATCGGCTGACTTTCCCATTAGCAGGGCTTGGTTTAGCGGTTAATTCTCAAAG
CTGGTTTGTCTCCCCTACCCAATCGATTTGGGGATTATTGCTCGGGTTCTTATCATTATGGATAGTGGTCAAGGTGTTCT
ATCTTATAACCAAAAAACACGGTATGGGGCAAGGTGATTTCAAACTATTAGCCGTACTAGGTGCTTGGCTTGGACCGATG
ATGTTACCGTTAATCATCCTCCTGTCGTCTTTACTTGGCTCAATCGTCGGTATTATCTTGATGAAAAGACATGGTGAGAG
CCAACCCTTCGCTTTTGGACCTTATATCGCTGTCGCTGGAATAGTTGCATTACTCTATGGCTCCGACATCGTTAATTGGT
ACTTGAATATGTACGTTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(149-258)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U4TI27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

55.068

98.997

0.545
  pilD Acinetobacter baumannii D1279779

54.392

98.997

0.538
  pilD Vibrio campbellii strain DS40M4

45.791

99.331

0.455
  pilD Vibrio cholerae strain A1552

46.479

94.983

0.441
  pilD Neisseria gonorrhoeae MS11

42.349

93.98

0.398

Multiple sequence alignment