Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DB29_RS10025 | Genome accession | NZ_CP012475 |
| Coordinates | 2041217..2041702 (+) | Length | 161 a.a. |
| NCBI ID | WP_011248939.1 | Uniprot ID | Q5WAH4 |
| Organism | Shouchella clausii strain ENTPro | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2036217..2046702
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DB29_RS10000 (DB29_02072) | yyaC | 2037371..2038003 (-) | 633 | WP_011248943.1 | spore protease YyaC | - |
| DB29_RS10005 (DB29_02073) | - | 2038089..2039117 (+) | 1029 | WP_035205682.1 | membrane protein | - |
| DB29_RS10010 (DB29_02074) | - | 2039223..2039375 (+) | 153 | WP_249413801.1 | DUF951 domain-containing protein | - |
| DB29_RS10015 (DB29_02075) | ychF | 2039444..2040544 (+) | 1101 | WP_035205686.1 | redox-regulated ATPase YchF | - |
| DB29_RS10020 (DB29_02076) | rpsF | 2040859..2041146 (+) | 288 | WP_011248940.1 | 30S ribosomal protein S6 | - |
| DB29_RS10025 (DB29_02077) | ssbA | 2041217..2041702 (+) | 486 | WP_011248939.1 | single-stranded DNA-binding protein | Machinery gene |
| DB29_RS10030 (DB29_02078) | rpsR | 2041741..2041974 (+) | 234 | WP_011248938.1 | 30S ribosomal protein S18 | - |
| DB29_RS10035 (DB29_02079) | - | 2042179..2043081 (+) | 903 | WP_011248937.1 | YybS family protein | - |
| DB29_RS10040 (DB29_02080) | - | 2043111..2045081 (+) | 1971 | WP_035205689.1 | DHH family phosphoesterase | - |
| DB29_RS10045 (DB29_02081) | rplI | 2045078..2045521 (+) | 444 | WP_011248935.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 17633.18 Da Isoelectric Point: 4.6010
>NTDB_id=154542 DB29_RS10025 WP_011248939.1 2041217..2041702(+) (ssbA) [Shouchella clausii strain ENTPro]
MLNRVVLVGRLTRDPELRFTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
SYDNNEGRRVFVTEIVAESVQFLEPRNSQNQSSGNNPGFDQYGAGNQGSGNQTGGSRSNGYDNDPFSNDGSIDISDDDLP
F
MLNRVVLVGRLTRDPELRFTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
SYDNNEGRRVFVTEIVAESVQFLEPRNSQNQSSGNNPGFDQYGAGNQGSGNQTGGSRSNGYDNDPFSNDGSIDISDDDLP
F
Nucleotide
Download Length: 486 bp
>NTDB_id=154542 DB29_RS10025 WP_011248939.1 2041217..2041702(+) (ssbA) [Shouchella clausii strain ENTPro]
TTGTTAAACCGTGTTGTTCTTGTCGGACGCTTAACGCGTGACCCTGAATTGCGATTCACGCCAAACGGTGTAGCTGTAGC
CAATTTTACGCTTGCAGTCAACCGTCCGTTTTCAAACCAGCAAGGAGAACGAGAAGCTGACTTCATTAACTGTGTTGTCT
GGCGCAAACCGGCTGAGAACGTCGCCAATTTCCTTAAAAAAGGGAGCCTTGCAGGAGTCGACGGCCGTGTGCAAACGCGA
AGCTATGACAATAATGAAGGCAGGCGCGTTTTTGTAACGGAAATCGTTGCTGAAAGCGTCCAATTTCTCGAACCTCGCAA
CAGTCAAAACCAATCCTCTGGGAATAATCCTGGTTTTGATCAGTACGGCGCTGGCAACCAAGGTTCTGGCAACCAAACTG
GTGGCAGCCGTTCTAATGGATATGATAACGACCCGTTCTCGAATGACGGTTCGATTGATATTTCCGACGATGATCTTCCA
TTTTAA
TTGTTAAACCGTGTTGTTCTTGTCGGACGCTTAACGCGTGACCCTGAATTGCGATTCACGCCAAACGGTGTAGCTGTAGC
CAATTTTACGCTTGCAGTCAACCGTCCGTTTTCAAACCAGCAAGGAGAACGAGAAGCTGACTTCATTAACTGTGTTGTCT
GGCGCAAACCGGCTGAGAACGTCGCCAATTTCCTTAAAAAAGGGAGCCTTGCAGGAGTCGACGGCCGTGTGCAAACGCGA
AGCTATGACAATAATGAAGGCAGGCGCGTTTTTGTAACGGAAATCGTTGCTGAAAGCGTCCAATTTCTCGAACCTCGCAA
CAGTCAAAACCAATCCTCTGGGAATAATCCTGGTTTTGATCAGTACGGCGCTGGCAACCAAGGTTCTGGCAACCAAACTG
GTGGCAGCCGTTCTAATGGATATGATAACGACCCGTTCTCGAATGACGGTTCGATTGATATTTCCGACGATGATCTTCCA
TTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
64.607 |
100 |
0.714 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.814 |
100 |
0.596 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
65.839 |
0.398 |