Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL020_RS11470 Genome accession   NZ_CP012460
Coordinates   2326973..2327485 (-) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium strain ISMMS_VRE_7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2321973..2332485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL020_RS11450 (AL020_11455) dnaB 2322497..2323864 (-) 1368 WP_002348938.1 replicative DNA helicase -
  AL020_RS11455 (AL020_11460) rplI 2324138..2324590 (-) 453 WP_002288372.1 50S ribosomal protein L9 -
  AL020_RS11460 (AL020_11465) - 2324596..2326568 (-) 1973 Protein_2257 DHH family phosphoesterase -
  AL020_RS11465 (AL020_11470) rpsR 2326711..2326947 (-) 237 WP_002288370.1 30S ribosomal protein S18 -
  AL020_RS11470 (AL020_11475) ssb 2326973..2327485 (-) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  AL020_RS11475 (AL020_11480) rpsF 2327535..2327834 (-) 300 WP_002288366.1 30S ribosomal protein S6 -
  AL020_RS11480 (AL020_11485) gyrA 2328070..2330541 (-) 2472 WP_002303652.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=154510 AL020_RS11470 WP_002288368.1 2326973..2327485(-) (ssb) [Enterococcus faecium strain ISMMS_VRE_7]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=154510 AL020_RS11470 WP_002288368.1 2326973..2327485(-) (ssb) [Enterococcus faecium strain ISMMS_VRE_7]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388

Multiple sequence alignment