Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL014_RS12275 Genome accession   NZ_CP012430
Coordinates   2456185..2456697 (-) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium strain ISMMS_VRE_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2451185..2461697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL014_RS12255 (AL014_12270) dnaB 2451708..2453075 (-) 1368 WP_002288373.1 replicative DNA helicase -
  AL014_RS12260 (AL014_12275) rplI 2453349..2453801 (-) 453 WP_002288372.1 50S ribosomal protein L9 -
  AL014_RS12265 (AL014_12280) - 2453807..2455780 (-) 1974 WP_002288371.1 DHH family phosphoesterase -
  AL014_RS12270 (AL014_12285) rpsR 2455923..2456159 (-) 237 WP_002288370.1 30S ribosomal protein S18 -
  AL014_RS12275 (AL014_12290) ssb 2456185..2456697 (-) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  AL014_RS12280 (AL014_12295) rpsF 2456747..2457046 (-) 300 WP_002288366.1 30S ribosomal protein S6 -
  AL014_RS12285 (AL014_12300) gyrA 2457282..2459753 (-) 2472 WP_002303991.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=154468 AL014_RS12275 WP_002288368.1 2456185..2456697(-) (ssb) [Enterococcus faecium strain ISMMS_VRE_1]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=154468 AL014_RS12275 WP_002288368.1 2456185..2456697(-) (ssb) [Enterococcus faecium strain ISMMS_VRE_1]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388

Multiple sequence alignment