Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   AMD29_RS05115 Genome accession   NZ_CP012419
Coordinates   979627..980940 (-) Length   437 a.a.
NCBI ID   WP_053515061.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SG-M1     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 974627..985940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD29_RS05095 (AMD29_05085) - 976107..976880 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  AMD29_RS05100 (AMD29_05090) - 976870..977556 (-) 687 WP_000280308.1 SatD family protein -
  AMD29_RS05105 (AMD29_05095) ffh 977623..979188 (-) 1566 WP_000863589.1 signal recognition particle protein -
  AMD29_RS05110 (AMD29_05100) - 979206..979538 (-) 333 WP_000402075.1 putative DNA-binding protein -
  AMD29_RS05115 (AMD29_05105) ciaH 979627..980940 (-) 1314 WP_053515061.1 sensor histidine kinase Regulator
  AMD29_RS05120 (AMD29_05110) ciaR 980924..981604 (-) 681 WP_000590620.1 response regulator transcription factor Regulator
  AMD29_RS05125 (AMD29_05115) - 981766..984315 (-) 2550 WP_000859382.1 M1 family metallopeptidase -
  AMD29_RS05130 (AMD29_05120) phoU 984461..985114 (-) 654 WP_000946330.1 phosphate signaling complex protein PhoU -
  AMD29_RS05135 (AMD29_05125) pstB 985148..985906 (-) 759 WP_000193363.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 49734.18 Da        Isoelectric Point: 9.4762

>NTDB_id=154401 AMD29_RS05115 WP_053515061.1 979627..980940(-) (ciaH) [Streptococcus agalactiae strain SG-M1]
MSKPIKISKFKKNVSDSHFIHFFTVFSGIFLVMTVIILQVMRYGVYSSVDSSLKYISTHPKNYINMVMSRTAAYLDNSNI
ASVKLKPGGQTVANTDIILFTSEEEVINYFDAFSNYQFLKPNKKNLGGISELTLTNIFGQDETYYAVTVKVNNPAYPNVT
YMTAIVNIDQLVNAKERYEKIIIFVMTTFWIISIGASIYLAKWTQKPIIENYERQKAFVENASHELRTPLAVLQNRLETL
FRKPNATILENSENIASSLDEVRNMRILTTNLLNLARRDDGIKPELAVIKPTLFDSIFENYDLIAQENGKNFTGHNMIQD
SFKTDKTLLKQLMTILFDNAIKYTDNDGSIDFTISETDKYLFLEIADNGPGISEEDKVRIFDRFYRVDKARTRQQGGFGL
GLSLAQQIVNSLRGNITVIDNKPRGSIFKIKLPKVKG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=154401 AMD29_RS05115 WP_053515061.1 979627..980940(-) (ciaH) [Streptococcus agalactiae strain SG-M1]
ATGTCGAAACCGATTAAGATAAGTAAATTCAAAAAAAATGTCTCAGATAGTCATTTTATCCATTTTTTCACAGTTTTTAG
TGGTATTTTTCTGGTTATGACTGTTATCATCCTCCAAGTCATGCGCTATGGTGTTTATTCTTCTGTTGATAGTAGTTTAA
AGTATATCAGTACCCATCCTAAAAATTACATCAATATGGTTATGTCACGTACTGCTGCCTACCTAGATAACTCCAATATC
GCAAGTGTCAAGTTAAAACCCGGCGGTCAGACAGTAGCTAATACTGATATTATTCTTTTTACATCAGAAGAAGAAGTCAT
TAACTATTTTGACGCATTTTCAAACTATCAGTTTTTAAAACCTAATAAAAAAAATCTAGGTGGCATTAGTGAATTAACTT
TAACCAACATCTTTGGTCAAGATGAGACATATTATGCTGTCACCGTAAAAGTTAATAACCCTGCTTATCCTAATGTGACT
TACATGACAGCTATTGTTAATATTGATCAATTAGTAAATGCTAAAGAACGCTATGAAAAAATTATTATATTTGTCATGAC
TACTTTTTGGATTATTTCAATTGGAGCAAGTATCTACTTAGCTAAATGGACACAAAAACCGATTATAGAAAACTACGAAA
GACAGAAGGCTTTTGTCGAAAATGCTAGCCACGAGCTGCGTACTCCCCTAGCTGTCTTACAAAATCGCCTAGAAACGCTA
TTCAGAAAACCGAATGCCACCATTTTAGAAAATAGTGAAAATATCGCTTCAAGTCTAGATGAAGTACGAAATATGCGTAT
TTTAACCACTAATCTTTTAAACTTAGCAAGACGTGATGATGGAATCAAACCAGAATTAGCTGTTATTAAGCCTACACTTT
TTGATAGTATCTTTGAGAATTATGATCTAATCGCCCAAGAGAATGGTAAAAATTTTACTGGACATAATATGATCCAAGAT
AGTTTCAAAACAGATAAGACACTGCTAAAACAACTCATGACTATTTTATTTGATAATGCTATAAAATATACTGACAATGA
TGGTAGCATTGACTTTACCATATCTGAAACTGATAAGTATCTCTTTTTAGAAATCGCTGATAATGGACCAGGAATTTCAG
AGGAGGATAAAGTCAGAATTTTTGATCGTTTTTACCGTGTTGACAAAGCAAGAACACGACAACAAGGAGGGTTTGGCCTC
GGCCTTTCTTTAGCTCAACAAATCGTTAACTCACTGCGAGGTAATATTACAGTAATTGATAATAAACCTAGAGGCAGTAT
TTTTAAGATAAAACTACCAAAAGTAAAAGGTTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(216-281)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(325-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

60.373

98.169

0.593
  ciaH Streptococcus pneumoniae Rx1

52.019

96.339

0.501
  ciaH Streptococcus pneumoniae D39

52.019

96.339

0.501
  ciaH Streptococcus pneumoniae R6

52.019

96.339

0.501
  ciaH Streptococcus pneumoniae TIGR4

52.019

96.339

0.501

Multiple sequence alignment