Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   A7319_RS28495 Genome accession   NZ_CP015638
Coordinates   6366910..6368985 (+) Length   691 a.a.
NCBI ID   WP_024078114.1    Uniprot ID   A0ACA7PFE7
Organism   Pseudomonas fluorescens strain L111     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6361910..6373985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7319_RS28465 (A7319_28435) exbD 6362825..6363250 (+) 426 WP_003195519.1 TonB system transport protein ExbD -
  A7319_RS28470 (A7319_28440) - 6363247..6363996 (+) 750 WP_069077265.1 TonB family protein -
  A7319_RS28475 (A7319_28445) - 6364165..6364500 (+) 336 WP_024078110.1 cupredoxin domain-containing protein -
  A7319_RS28480 (A7319_28450) - 6364504..6365322 (+) 819 WP_069077264.1 FTR1 family iron permease -
  A7319_RS28485 (A7319_28455) - 6365343..6365873 (+) 531 WP_024078112.1 iron transporter -
  A7319_RS28490 (A7319_28460) - 6365987..6366901 (+) 915 WP_069077263.1 hydrogen peroxide-inducible genes activator -
  A7319_RS28495 (A7319_28465) recG 6366910..6368985 (+) 2076 WP_024078114.1 ATP-dependent DNA helicase RecG Machinery gene
  A7319_RS28500 (A7319_28470) - 6369063..6370463 (+) 1401 WP_069077262.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  A7319_RS30210 - 6370575..6371950 (+) 1376 WP_420492573.1 IS3 family transposase -
  A7319_RS28515 (A7319_28485) dgoD 6372154..6373302 (-) 1149 WP_069077285.1 galactonate dehydratase -
  A7319_RS28520 (A7319_28490) - 6373363..6373983 (-) 621 WP_024072583.1 2-dehydro-3-deoxy-6-phosphogalactonate aldolase -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76084.73 Da        Isoelectric Point: 7.1876

>NTDB_id=154394 A7319_RS28495 WP_024078114.1 6366910..6368985(+) (recG) [Pseudomonas fluorescens strain L111]
MTELSQVPVTALKGVGEAMAEKLAKVGLENLQDVLFHLPLRYQDRTRVVPIGHLRPGQDAVVEGTVSGADVVMGKRRSLV
VRLQDGTGGLSLRFYHFSNAQKEGLKRGTRVRCYGEARPGASGLEIYHPEYRAITGDEPPPVDTTLTPIYPLTEGLTQQR
LRQLCMQTLTMLGPTSLPDWLPQELARDYQLAPLADAIRYLHHPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRLR
ESMRSLRAPAMPKATRLPAQYLANLGFAPTGAQQRVGNEIAYDLSQKEPMLRLIQGDVGAGKTVVAALAALQALEAGYQV
ALMAPTEILAEQHFITFKRWLEPLGLEVAWLAGKLKGKNRAAALEQIAAGAPMVVGTHALFQDEVTFKNLALVIIDEQHR
FGVQQRLALRQKGVGGRMSPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVRGACAE
GRQAYWVCTLIEESEELTCQAAETTYEDLTSALGELKVGLIHGRMKPAEKAAVMAEFKAGNLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQALLERWPHHVSPLLDRWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=154394 A7319_RS28495 WP_024078114.1 6366910..6368985(+) (recG) [Pseudomonas fluorescens strain L111]
ATGACAGAGCTGTCGCAGGTGCCAGTGACGGCACTCAAGGGTGTCGGTGAAGCCATGGCCGAGAAGCTGGCCAAGGTCGG
CCTGGAGAACCTCCAGGACGTGCTGTTCCACCTGCCCCTGCGCTATCAGGATCGCACCCGCGTAGTGCCCATCGGCCACT
TGCGGCCTGGACAGGACGCAGTGGTCGAAGGCACCGTCAGCGGCGCCGACGTGGTCATGGGCAAGCGCCGCAGCCTGGTG
GTGCGCCTGCAGGACGGCACCGGTGGCCTGAGCCTGCGCTTCTACCATTTCAGCAACGCGCAGAAGGAAGGCCTCAAGCG
CGGCACCCGCGTGCGCTGCTACGGCGAGGCGCGGCCCGGCGCTTCTGGCCTGGAAATCTATCATCCGGAATACCGCGCCA
TTACCGGCGACGAGCCACCGCCGGTCGACACCACGCTCACACCGATCTACCCGTTGACCGAAGGCCTGACCCAACAGCGC
CTGCGCCAACTGTGCATGCAGACCCTGACGATGCTCGGCCCCACCAGCCTGCCCGACTGGCTGCCCCAGGAGCTGGCGCG
CGACTACCAGCTGGCGCCGCTGGCTGATGCGATTCGCTACCTGCACCACCCACCGGCCGACGCCGATGTCGACGAATTGG
CCCTGGGTCATCACTGGGCCCAGCATCGCCTGGCGTTCGAAGAGCTGCTGACCCACCAACTGTCCCAACAGCGCCTACGC
GAAAGCATGCGCTCCCTGCGCGCACCAGCGATGCCCAAGGCCACGCGCCTGCCTGCGCAGTACCTGGCCAACCTCGGCTT
TGCGCCGACCGGCGCCCAGCAGCGCGTGGGCAATGAAATCGCCTACGACTTGAGCCAGAAGGAGCCCATGCTGCGGCTGA
TCCAGGGCGACGTGGGCGCAGGCAAGACCGTGGTTGCCGCCCTCGCCGCCTTGCAGGCCCTGGAAGCCGGGTACCAAGTC
GCGCTGATGGCGCCCACCGAGATCCTCGCCGAGCAGCACTTCATCACCTTCAAGCGCTGGCTCGAACCCCTGGGCCTGGA
AGTGGCATGGCTGGCGGGCAAGCTCAAGGGCAAGAACCGCGCAGCCGCCCTCGAACAGATCGCCGCCGGCGCACCGATGG
TGGTGGGTACCCACGCGCTGTTCCAGGACGAAGTGACGTTCAAGAACCTGGCCCTGGTGATCATCGACGAACAACACCGT
TTCGGCGTGCAACAACGCCTGGCCCTGCGTCAGAAAGGCGTGGGCGGCCGCATGAGCCCGCACCAACTGATCATGACCGC
CACGCCGATCCCGCGCACCCTGGCCATGAGTGCCTACGCCGACCTCGACACCTCGATCCTTGACGAACTGCCTCCCGGCC
GAACCCCGGTCAACACCGTGCTGGTCACCGACACCCGCCGCGTGGAAGTGATCGAGCGCGTGCGTGGCGCCTGTGCCGAA
GGGCGCCAGGCGTACTGGGTGTGCACGTTGATTGAAGAATCCGAAGAGCTGACCTGCCAGGCCGCCGAGACCACGTATGA
AGACCTCACCAGCGCCCTCGGCGAGCTCAAGGTCGGGCTGATCCACGGCCGCATGAAGCCGGCAGAGAAAGCTGCGGTGA
TGGCCGAATTCAAGGCCGGCAACCTGCAACTGCTGGTGGCCACCACGGTCATCGAAGTCGGTGTGGACGTGCCCAACGCC
AGCCTGATGATCATCGAAAACCCCGAGCGCCTGGGCCTGGCGCAACTGCACCAGTTGCGCGGCCGCGTCGGCCGGGGCAG
CGCCGCCAGCCACTGTGTGCTGCTCTACCACCCTCCACTGTCGCAGATCGGTCGTCAGCGCCTGGGCATCATGCGTGAAA
CCAACGACGGTTTTGTCATTGCCGAGAAAGACCTCGAACTGCGCGGCCCCGGCGAGATGCTCGGTACCCGCCAGACCGGC
CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCCGACCTGCTGCCCGCTGTGCGCGATGCGGCGCAAGCGCTGCT
GGAGCGCTGGCCGCATCACGTCAGCCCGCTGCTGGATCGCTGGCTTCGCCATGGGCAGCAATACGGCCAAGTGTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(12-171)

DEAD/DEAH box helicase (DEAD)

(293-408)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

Helicase conserved C-terminal domain (Helicase_C)

(480-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.592

97.829

0.495
  recG/mmsA Streptococcus pneumoniae R6

40.356

97.54

0.394
  recG/mmsA Streptococcus pneumoniae R36A

40.356

97.54

0.394
  recG Bacillus subtilis subsp. subtilis str. 168

39.822

97.395

0.388