Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AK972_RS06955 Genome accession   NZ_CP012400
Coordinates   1435538..1437829 (+) Length   763 a.a.
NCBI ID   WP_063027914.1    Uniprot ID   -
Organism   Pseudomonas yamanorum strain LBUM636     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1430538..1442829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK972_RS06940 (AK972_1347) - 1432786..1433514 (+) 729 WP_017475831.1 response regulator transcription factor -
  AK972_RS06945 (AK972_1348) - 1433501..1434871 (+) 1371 WP_063027912.1 sensor histidine kinase -
  AK972_RS06950 (AK972_1349) - 1434875..1435390 (-) 516 WP_017475829.1 DUF2062 domain-containing protein -
  AK972_RS06955 (AK972_1350) comA 1435538..1437829 (+) 2292 WP_063027914.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AK972_RS06960 (AK972_1351) exbB 1437861..1438496 (+) 636 WP_063033914.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AK972_RS06965 (AK972_1352) - 1438493..1438921 (+) 429 WP_004371361.1 ExbD/TolR family protein -
  AK972_RS06970 (AK972_1353) lpxK 1438921..1439931 (+) 1011 WP_063027916.1 tetraacyldisaccharide 4'-kinase -
  AK972_RS06975 (AK972_1354) - 1439956..1440141 (+) 186 WP_003174668.1 Trm112 family protein -
  AK972_RS06980 (AK972_1355) kdsB 1440138..1440902 (+) 765 WP_008434982.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AK972_RS06985 (AK972_1356) - 1440902..1441366 (+) 465 WP_017475823.1 low molecular weight protein-tyrosine-phosphatase -
  AK972_RS06990 (AK972_1357) murB 1441363..1442382 (+) 1020 WP_063027918.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 83000.42 Da        Isoelectric Point: 10.0941

>NTDB_id=154300 AK972_RS06955 WP_063027914.1 1435538..1437829(+) (comA) [Pseudomonas yamanorum strain LBUM636]
MFALALGLLALRFLPALPSSGWLLLMPVLALMLLPFRTYPLAFFLLGLGWACLSAQWALDDRLAPRLDGQTRWVEGRVSG
LPQQTGDGVRFELTDSRSRKDLLPKRIRVSWRGGPAVQSGERWRLAVTLKRPSGLLNAEGFDYEAWLLAQRIGATGSVKD
GQKLAPARHAWRDGIRQRLLAADAQGREAGLAALVLGDGSGLAAEDWRVLQDTGTVHLLVISGQHIGLLAGLIYGLVAGL
ARFGCWPKPLPWLPWACGLGFAAALGYGLLAGFEVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALNAVLILEPLASLQ
PGFWLSFAAVAVLILAFSGRLGPWRAWQAWTRAQWLIAIGLFPLLLVLGLPISLSGPLANLVAVPWISLVVLPLALLGTV
LLPLPYIGEGLLWLAGGTLDWLFKALALLAQYVPAWIPAHVPMGYWLVSLLGAVLLLLPKGVPFRLLGWPMLLLAVFPPR
ESIPHGRVEVVQLDVGQGLAIILRTRNHVLLYDAGPRSGEFDLGARVVLPALRKLGVAGLDMMLLSHADADHAGGALAVA
HGLPIKRVVGGETERLPAALGTQACVSGERWDWDGVTFELWQWPDATDGNQMSCVLLVQANGERLLLTGDIDREAERALL
ATPLGAPVDWLQAPHHGSRSSSSWPFLQRLAPKGVLISRGRSNAFGHPHPHVLERYQAVGSLIYDSAEQGALRLQLGTFQ
PPQAVRSQRRFWREPPPQNSVTKDWALRQDALGPASPSAGPLW

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=154300 AK972_RS06955 WP_063027914.1 1435538..1437829(+) (comA) [Pseudomonas yamanorum strain LBUM636]
ATGTTCGCACTCGCGCTGGGGCTGCTCGCCCTGCGTTTTTTACCTGCGTTGCCGTCCAGCGGCTGGCTGCTGCTGATGCC
GGTGTTGGCCCTGATGCTGCTGCCTTTTCGCACCTATCCGCTGGCGTTTTTCCTGCTCGGGCTGGGCTGGGCGTGCCTGA
GTGCGCAGTGGGCGCTGGACGACCGGTTGGCACCGCGTCTGGATGGCCAGACCCGCTGGGTGGAGGGGCGTGTCAGCGGG
TTGCCGCAGCAGACAGGCGACGGTGTTCGCTTTGAACTGACCGACAGCCGGTCACGCAAGGACCTGCTTCCGAAGCGCAT
CCGTGTGTCCTGGCGTGGCGGGCCAGCGGTTCAGAGCGGTGAGCGCTGGCGGTTGGCCGTGACCCTCAAGCGTCCCTCCG
GTTTGCTTAATGCCGAGGGGTTTGACTATGAAGCCTGGCTGCTGGCCCAGAGGATTGGCGCCACGGGTTCGGTCAAGGAT
GGCCAGAAGCTGGCGCCTGCGCGGCATGCCTGGCGCGACGGAATTCGCCAGCGGCTGTTGGCAGCGGATGCCCAAGGGCG
AGAGGCGGGCCTGGCGGCGCTGGTGCTCGGGGATGGTTCCGGGCTGGCCGCCGAGGATTGGCGGGTTCTGCAAGACACCG
GCACCGTGCATTTATTGGTGATTTCCGGGCAACATATTGGGCTGCTGGCAGGGTTGATCTATGGCCTGGTCGCCGGCCTG
GCGCGCTTCGGGTGTTGGCCGAAACCCTTGCCGTGGCTGCCCTGGGCCTGCGGCCTGGGGTTTGCTGCGGCGCTGGGCTA
TGGCTTGCTGGCCGGTTTTGAAGTGCCGGTGCAACGGGCCTGCGTGATGGTGGGATTGGTCCTGCTATGGCGCCTGCGGT
TTCGTCACTTGGGGATCTGGTGGCCGCTGTTGCTGGCGCTGAACGCGGTGCTCATCCTCGAACCGCTGGCCAGCCTGCAA
CCGGGGTTCTGGCTGTCCTTTGCGGCGGTGGCGGTGCTGATCCTGGCGTTCAGTGGCCGACTGGGCCCCTGGCGTGCCTG
GCAGGCCTGGACCCGGGCCCAGTGGTTGATTGCCATCGGCCTGTTTCCGCTGCTGCTGGTGCTCGGTTTGCCCATCAGCC
TGAGCGGGCCGCTGGCCAACCTGGTTGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCTTGCTGGGTACGGTG
TTATTGCCGCTGCCTTATATAGGTGAAGGTTTGTTATGGCTGGCGGGCGGCACACTGGACTGGCTGTTCAAGGCCTTGGC
GTTGCTGGCGCAGTACGTGCCGGCCTGGATACCGGCGCACGTGCCCATGGGCTATTGGCTGGTGAGCCTGCTGGGGGCGG
TGCTGTTATTGCTACCCAAGGGCGTGCCGTTTCGGCTGCTGGGCTGGCCGATGTTGCTGCTGGCGGTGTTTCCGCCTCGG
GAGTCGATCCCTCACGGACGCGTCGAGGTGGTGCAACTGGATGTGGGCCAAGGGTTGGCGATCATCCTGCGTACCCGCAA
CCACGTTCTGCTCTATGACGCCGGGCCGCGCTCCGGTGAGTTCGACCTTGGCGCGCGCGTGGTATTGCCTGCGTTGCGCA
AACTGGGTGTCGCGGGGCTGGACATGATGCTGCTCAGTCATGCCGATGCCGATCATGCCGGTGGTGCGTTGGCGGTTGCC
CACGGGCTGCCGATCAAGCGCGTGGTGGGCGGCGAGACCGAACGGCTGCCGGCGGCACTCGGTACTCAAGCCTGCGTCAG
TGGCGAGCGGTGGGATTGGGATGGCGTGACCTTCGAGCTGTGGCAATGGCCCGATGCGACGGACGGTAATCAGATGTCCT
GTGTGTTGCTGGTGCAGGCCAATGGCGAACGGTTGCTGCTGACCGGTGATATTGACCGTGAAGCCGAGCGGGCATTGCTG
GCCACCCCCCTGGGGGCTCCTGTCGATTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGCTCGTCGTCCTGGCCGTTTCT
CCAGCGCCTTGCACCCAAGGGAGTGTTGATTTCCCGTGGCCGCAGCAATGCCTTCGGCCATCCCCATCCCCACGTATTGG
AGCGTTACCAGGCCGTGGGCAGCCTGATTTATGACAGCGCCGAGCAAGGCGCACTCCGTCTGCAACTGGGCACCTTCCAG
CCGCCGCAGGCCGTGCGCAGCCAGCGGCGTTTCTGGCGCGAGCCCCCGCCGCAAAACAGCGTTACCAAAGACTGGGCCCT
GCGACAGGATGCTCTGGGGCCGGCCAGCCCTTCCGCCGGACCCTTATGGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(16-163)

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-661)

Competence protein (Competence)

(194-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.309

94.233

0.587
  comA Ralstonia pseudosolanacearum GMI1000

35.581

100

0.374

Multiple sequence alignment