Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AK972_RS06960 Genome accession   NZ_CP012400
Coordinates   1437861..1438496 (+) Length   211 a.a.
NCBI ID   WP_063033914.1    Uniprot ID   -
Organism   Pseudomonas yamanorum strain LBUM636     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1432861..1443496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK972_RS06945 (AK972_1348) - 1433501..1434871 (+) 1371 WP_063027912.1 sensor histidine kinase -
  AK972_RS06950 (AK972_1349) - 1434875..1435390 (-) 516 WP_017475829.1 DUF2062 domain-containing protein -
  AK972_RS06955 (AK972_1350) comA 1435538..1437829 (+) 2292 WP_063027914.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AK972_RS06960 (AK972_1351) exbB 1437861..1438496 (+) 636 WP_063033914.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AK972_RS06965 (AK972_1352) - 1438493..1438921 (+) 429 WP_004371361.1 ExbD/TolR family protein -
  AK972_RS06970 (AK972_1353) lpxK 1438921..1439931 (+) 1011 WP_063027916.1 tetraacyldisaccharide 4'-kinase -
  AK972_RS06975 (AK972_1354) - 1439956..1440141 (+) 186 WP_003174668.1 Trm112 family protein -
  AK972_RS06980 (AK972_1355) kdsB 1440138..1440902 (+) 765 WP_008434982.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AK972_RS06985 (AK972_1356) - 1440902..1441366 (+) 465 WP_017475823.1 low molecular weight protein-tyrosine-phosphatase -
  AK972_RS06990 (AK972_1357) murB 1441363..1442382 (+) 1020 WP_063027918.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.02 Da        Isoelectric Point: 7.3613

>NTDB_id=154301 AK972_RS06960 WP_063033914.1 1437861..1438496(+) (exbB) [Pseudomonas yamanorum strain LBUM636]
MWELVKSGGWMMLPIILSSIAALGIIAERLWTLRASRVTPDHLLGQVWGWIKNKQLDKAKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=154301 AK972_RS06960 WP_063033914.1 1437861..1438496(+) (exbB) [Pseudomonas yamanorum strain LBUM636]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTTTGAGTTCCATCGCCGCACTCGGCATCATCGC
CGAACGCCTGTGGACCCTGCGTGCCAGCCGTGTAACACCTGACCACCTGCTGGGCCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAGGCAAAGCTCAAGGAACTGCGCGCCAACTCGCCCCTGGGTGAAATCCTCGCCGCCGGCCTCGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAGGCCGCCGCCCGGGTCATCCATGAGTTGGAGCGCTACAT
CAATGCCTTGGGCACCATTGCCGCCATGGCACCGTTGCTCGGCCTGCTCGGTACGGTGTTGGGCATGATCGATATCTTCA
GCTCCTTCATGGGCTCGGGCATGACCACCAACGCTGCGGTGCTGGCCGGTGGTATTTCCAAGGCGTTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGTTTTCTGCAACGGCGCATCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment