Detailed information NTG0154295

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AK972_RS03365
• Genome accession: NZ_CP012400
• Coordinates: 676072..676950 (-)
• Length: 292 a.a.
• NCBI ID: WP_412458849.1
• Uniprot ID: -
• Organism: Pseudomonas yamanorum strain LBUM636
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 671072..681950

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AK972_RS03325 (AK972_0632)	-	671470..672768 (-)	1299	WP_063027050.1	NAD(P)/FAD-dependent oxidoreductase	-
AK972_RS03330 (AK972_0633)	-	672829..673002 (-)	174	WP_010174986.1	DUF3094 family protein	-
AK972_RS03335 (AK972_0634)	-	673092..673721 (-)	630	WP_008437312.1	DUF1780 domain-containing protein	-
AK972_RS03340 (AK972_0635)	-	673824..674291 (+)	468	WP_063027052.1	hypothetical protein	-
AK972_RS03345 (AK972_0636)	-	674288..674977 (+)	690	WP_063027054.1	energy-coupling factor ABC transporter permease	-
AK972_RS03350 (AK972_0637)	-	675043..675258 (+)	216	WP_003215917.1	hypothetical protein	-
AK972_RS03355 (AK972_0638)	yacG	675255..675455 (-)	201	WP_063027056.1	DNA gyrase inhibitor YacG	-
AK972_RS03360 (AK972_0639)	coaE	675452..676075 (-)	624	WP_017477788.1	dephospho-CoA kinase	-
AK972_RS03365 (AK972_0640)	pilD	676072..676950 (-)	879	WP_412458849.1	prepilin peptidase	Machinery gene
AK972_RS03370 (AK972_0641)	pilC	676947..678155 (-)	1209	WP_063027058.1	type II secretion system F family protein	Machinery gene
AK972_RS03375 (AK972_0642)	-	678357..678770 (+)	414	WP_063027060.1	pilin	-
AK972_RS03380 (AK972_0644)	-	678857..680266 (+)	1410	WP_063027062.1	O-antigen ligase family protein	-
AK972_RS03390 (AK972_0645)	-	680515..680820 (+)	306	WP_008437299.1	DUF6388 family protein	-
AK972_RS03395 (AK972_0646)	nadC	680890..681738 (-)	849	WP_063027064.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32193.45 Da
• Isoelectric Point: 7.9746

>NTDB_id=154295 AK972_RS03365 WP_412458849.1 676072..676950(-) (pilD) [Pseudomonas yamanorum strain LBUM636]
MSTPLTEILVYQPWVFVSGALVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPAEPIAAPYNLMRPNSCCPHCNHP
IRPWENIPLLSYMLLKGRCSSCHQPIGARYPLTELACGLISALVAWHFGFGWAAGAAMVFSWGLLAMSLIDVDHQLLPDV
LVLPLLWLGLILNSFGAFVSLPDALWGAVAGYMSLWSVFWLFKLITGKDGMGYGDFKLLAMLGAWGGWQILPMTLLLSSL
VGVMGGLILLRLRKSQVSVPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 879 bp

>NTDB_id=154295 AK972_RS03365 WP_412458849.1 676072..676950(-) (pilD) [Pseudomonas yamanorum strain LBUM636]
TTGAGCACACCACTGACTGAGATTCTTGTTTATCAACCCTGGGTGTTTGTATCTGGCGCGCTGGTGCTGGGCCTGATTGT
CGGCAGTTTCCTCAACGTGCTGGTATGGCGCCTGCCGAAAATGCTGGAACGCGAATGGCGAGCCCAGGCCCATGAAGTCC
TTGGCCTTCCCGCCGAGCCCATCGCGGCGCCCTATAACCTGATGCGCCCCAACTCCTGTTGCCCACACTGCAATCACCCG
ATTCGCCCCTGGGAGAATATTCCGCTGCTCAGCTACATGCTGCTCAAGGGGCGCTGCTCGAGTTGCCATCAACCTATCGG
CGCACGTTATCCGCTCACCGAGTTGGCGTGCGGGTTGATCTCGGCGCTTGTCGCCTGGCATTTCGGTTTTGGCTGGGCGG
CCGGCGCGGCAATGGTGTTTAGCTGGGGCTTGTTGGCGATGAGCCTGATCGACGTAGACCACCAGTTGCTGCCGGACGTG
CTGGTGCTGCCGTTGCTATGGCTGGGCCTGATCCTCAACAGCTTTGGCGCTTTTGTGTCATTGCCCGATGCGCTGTGGGG
CGCGGTAGCCGGCTACATGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGATGGAATGGGTTACG
GGGATTTCAAGCTGCTCGCCATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGATGACGCTGCTGCTGTCGTCCCTG
GTGGGCGTGATGGGAGGCCTGATTCTATTGCGCCTGCGCAAATCCCAAGTATCGGTTCCAATGCCTTTTGGTCCGTATCT
GGCAATTGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.944	97.945	0.548
pilD	Vibrio campbellii strain DS40M4	53.333	97.603	0.521
pilD	Acinetobacter nosocomialis M2	48.175	93.836	0.452
pilD	Acinetobacter baumannii D1279779	48.175	93.836	0.452
pilD	Neisseria gonorrhoeae MS11	48.148	92.466	0.445