Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   A7317_RS27070 Genome accession   NZ_CP015637
Coordinates   6059242..6059886 (-) Length   214 a.a.
NCBI ID   WP_024077696.1    Uniprot ID   A0ACA7PE20
Organism   Pseudomonas fluorescens strain L321     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6054242..6064886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7317_RS27045 (A7317_27015) trpE 6054431..6055912 (+) 1482 WP_069077174.1 anthranilate synthase component I -
  A7317_RS27050 (A7317_27020) - 6055922..6056515 (+) 594 WP_024077700.1 aminodeoxychorismate/anthranilate synthase component II -
  A7317_RS27055 (A7317_27025) trpD 6056525..6057574 (+) 1050 WP_069077175.1 anthranilate phosphoribosyltransferase -
  A7317_RS27060 (A7317_27030) trpC 6057571..6058407 (+) 837 WP_024077698.1 indole-3-glycerol phosphate synthase TrpC -
  A7317_RS27065 (A7317_27035) - 6058550..6059245 (+) 696 WP_069077176.1 lipoate--protein ligase family protein -
  A7317_RS27070 (A7317_27040) crp 6059242..6059886 (-) 645 WP_024077696.1 cAMP-activated global transcriptional regulator CRP Regulator
  A7317_RS27075 (A7317_27045) - 6060135..6060557 (+) 423 WP_005792019.1 OsmC family protein -
  A7317_RS27080 (A7317_27050) coq7 6060609..6061256 (-) 648 WP_024077695.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  A7317_RS27085 (A7317_27055) - 6061375..6061713 (-) 339 WP_024077694.1 histidine triad nucleotide-binding protein -
  A7317_RS27090 (A7317_27060) - 6061759..6062547 (-) 789 WP_024077693.1 SDR family NAD(P)-dependent oxidoreductase -
  A7317_RS27095 (A7317_27065) - 6062611..6063573 (-) 963 WP_024077692.1 DUF805 domain-containing protein -
  A7317_RS27100 (A7317_27070) - 6063645..6064607 (-) 963 WP_024077691.1 NAD(P)H-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24346.35 Da        Isoelectric Point: 8.2495

>NTDB_id=154286 A7317_RS27070 WP_024077696.1 6059242..6059886(-) (crp) [Pseudomonas fluorescens strain L321]
MVALTPIPKIKNLDKLLMHCQRRRHPAKHNIICAGERSETLFFIIKGSVTILIEDEDGREMIIAYLNTGDFFGELGLFEQ
AGKEQERSAWVRTKIECEVAEISYAKFRELAQQDPDILYALSGQIAQRLRDTTRKVGDLAFFDVTGRVARCLLELCKQPD
AMTHPDGMQIKVTRQEIGRIVGCSREMVGRVLKDLEERNLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=154286 A7317_RS27070 WP_024077696.1 6059242..6059886(-) (crp) [Pseudomonas fluorescens strain L321]
ATGGTTGCTCTTACTCCCATACCCAAGATCAAGAATCTCGACAAGCTGTTGATGCACTGCCAGCGCCGACGTCACCCGGC
CAAGCACAACATCATCTGCGCAGGCGAGCGTTCCGAAACACTGTTCTTCATCATCAAGGGCTCGGTCACCATCCTGATCG
AGGATGAAGACGGCCGCGAAATGATCATCGCCTACCTCAATACCGGGGATTTCTTTGGCGAACTGGGGCTGTTTGAACAA
GCCGGCAAAGAGCAGGAACGCAGCGCCTGGGTACGGACCAAGATCGAATGCGAAGTGGCCGAAATCAGTTACGCGAAATT
TCGCGAATTGGCCCAGCAGGACCCCGATATTCTCTACGCCTTGAGCGGCCAGATTGCCCAACGCCTGCGCGACACCACAC
GCAAGGTCGGCGACCTGGCGTTCTTTGACGTCACCGGTCGGGTAGCCCGCTGCCTGCTGGAGCTGTGCAAACAACCTGAC
GCCATGACCCACCCCGACGGCATGCAAATCAAAGTCACGCGCCAAGAGATCGGGCGCATTGTCGGGTGTTCACGGGAAAT
GGTCGGTCGCGTGCTCAAGGACCTGGAAGAACGCAACCTGGTGCACGTCAAAGGCAAGACGATGGTGGTGTTCGGCACCC
GTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(170-200)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

65.025

94.86

0.617
  crp Haemophilus influenzae Rd KW20

57.426

94.393

0.542
  crp Acinetobacter baumannii D1279779

52.133

98.598

0.514