Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FORC36_RS02585 Genome accession   NZ_CP015512
Coordinates   541540..542265 (-) Length   241 a.a.
NCBI ID   WP_011078574.1    Uniprot ID   A0A3Q0L243
Organism   Vibrio vulnificus strain FORC_036     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 536540..547265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC36_RS02560 (FORC36_0491) sltY 536571..538526 (+) 1956 WP_011078579.1 murein transglycosylase -
  FORC36_RS02565 (FORC36_0492) trpR 538542..538850 (+) 309 WP_011078578.1 trp operon repressor -
  FORC36_RS02570 (FORC36_0493) yjjX 538881..539417 (-) 537 WP_039552773.1 inosine/xanthosine triphosphatase -
  FORC36_RS02575 (FORC36_0494) pheA 539442..540620 (-) 1179 WP_011078576.1 prephenate dehydratase -
  FORC36_RS02580 (FORC36_0495) hpf 540864..541187 (-) 324 WP_011078575.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FORC36_RS02585 (FORC36_0496) comL 541540..542265 (-) 726 WP_011078574.1 outer membrane protein assembly factor BamD Machinery gene
  FORC36_RS02590 (FORC36_0497) rluD 542402..543379 (+) 978 WP_011078573.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FORC36_RS02595 (FORC36_0498) pgeF 543383..544099 (+) 717 WP_185090550.1 peptidoglycan editing factor PgeF -
  FORC36_RS02600 (FORC36_0499) clpC 544217..546790 (+) 2574 WP_085760757.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27786.57 Da        Isoelectric Point: 5.6928

>NTDB_id=153996 FORC36_RS02585 WP_011078574.1 541540..542265(-) (comL) [Vibrio vulnificus strain FORC_036]
MKHHTLAGLLAVSVLFGCSSSEQIVPDVPPAELYAEAQTSLQGGNWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRSDRDPEPVKQAFDDFKKLLERYPNSPYAED
SQKRMFALKNRLAEYDLATADYYLRREAWIAAINRSQELQKTYPDTIAARKSLKIQLEAYKQLGLQDAIARTEELIRLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=153996 FORC36_RS02585 WP_011078574.1 541540..542265(-) (comL) [Vibrio vulnificus strain FORC_036]
ATGAAACACCATACTTTAGCAGGCCTGCTCGCGGTATCAGTGTTGTTTGGCTGTTCAAGCAGTGAACAAATTGTGCCGGA
TGTGCCACCAGCAGAGCTGTATGCAGAAGCACAAACCTCTCTTCAAGGAGGAAACTGGCTCACAGCGATTGAGAAACTAG
AAGCGCTAGATTCCCGCTACCCTTTTGGTGCTTACTCAGAACAAGTACAACTTGATTTGATTTACGCCTATTACAAGAAC
GATGATTTGGCTTTGGGTCTGGCGACCATTTCGCGTTTTACGCGTTTAAATCCAACACACGAAAAAATGGACTGGGTGCT
GTACATGCGTGGTCTCACCCATATGGCACAAGATCGTAACTTCATGCACGACTTGTTTAACATTGATCGTAGCGATCGCG
ATCCTGAGCCAGTCAAACAAGCTTTTGATGATTTCAAAAAACTGCTTGAGCGCTATCCAAACAGCCCATATGCGGAAGAT
TCTCAAAAACGCATGTTTGCTCTTAAAAACCGTTTAGCAGAATATGATCTAGCAACCGCCGATTACTATCTGCGTCGTGA
AGCTTGGATTGCAGCCATCAATCGTTCTCAGGAGTTGCAGAAAACCTATCCAGATACCATCGCTGCGAGAAAATCACTCA
AAATCCAGCTTGAGGCGTATAAACAATTAGGTTTACAAGATGCCATCGCACGCACTGAAGAGTTGATACGTCTGAATCCG
CTCTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L243

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.585

0.394
  comL Neisseria gonorrhoeae MS11

39.167

99.585

0.39

Multiple sequence alignment