Detailed information NTG0153997

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: FORC36_RS02600
• Genome accession: NZ_CP015512
• Coordinates: 544217..546790 (+)
• Length: 857 a.a.
• NCBI ID: WP_085760757.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain FORC_036
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 539217..551790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC36_RS02575 (FORC36_0494)	pheA	539442..540620 (-)	1179	WP_011078576.1	prephenate dehydratase	-
FORC36_RS02580 (FORC36_0495)	hpf	540864..541187 (-)	324	WP_011078575.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
FORC36_RS02585 (FORC36_0496)	comL	541540..542265 (-)	726	WP_011078574.1	outer membrane protein assembly factor BamD	Machinery gene
FORC36_RS02590 (FORC36_0497)	rluD	542402..543379 (+)	978	WP_011078573.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
FORC36_RS02595 (FORC36_0498)	pgeF	543383..544099 (+)	717	WP_185090550.1	peptidoglycan editing factor PgeF	-
FORC36_RS02600 (FORC36_0499)	clpC	544217..546790 (+)	2574	WP_085760757.1	ATP-dependent chaperone ClpB	Regulator

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 96112.99 Da
• Isoelectric Point: 5.2933

>NTDB_id=153997 FORC36_RS02600 WP_085760757.1 544217..546790(+) (clpC) [Vibrio vulnificus strain FORC_036]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTILNVDVTHLRSKLSEMLDRLPKVSGIGGD
VQLSSAMGAMFNLCDKIAQKRQDAYISSEIFLLAAIEDRGPLGQLFKELGLTEQKVSQAIEQIRGGQKVNDQNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELSKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASS
IRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLRSLNEELNEKEREFAELEEIWNAEKAALSGTQHIKAALE
QARMDMEFARRAGDLSRMSELQYGRIPELEKQLDLATQAEMQEMTLLKNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQKEAVEVVSNAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLANFMFDSEDAMVRIDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSSRIQENFAMLDYQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLSQDHIKSIAAIQLNRLANRMEEHGYQLEVSDKAL
ELIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSVLPDKKIQLIVNNDQIVAHQ

Nucleotide

• Length: 2574 bp

>NTDB_id=153997 FORC36_RS02600 WP_085760757.1 544217..546790(+) (clpC) [Vibrio vulnificus strain FORC_036]
ATGCGTCTTGATCGATTTACCAGCAAATTTCAAATCGCTATCTCTGATGCACAATCATTGGCGTTAGGGCGCGATCATCA
ATACATTGAACCTGTTCACTTAATGGTGGCGCTGCTTGATCAAAACGGCAGCCCTATTCGTCCACTGCTGACCATCTTAA
ATGTGGATGTCACTCACCTACGTTCAAAACTTAGCGAAATGTTAGATCGCTTACCCAAAGTGAGCGGTATTGGTGGTGAT
GTACAGCTTTCCTCAGCCATGGGCGCGATGTTTAACTTGTGCGATAAGATTGCACAAAAACGCCAAGATGCTTACATCTC
ATCTGAAATCTTTTTGCTCGCAGCCATCGAAGATAGAGGGCCACTTGGTCAGCTCTTCAAAGAGCTAGGCTTAACTGAAC
AGAAAGTGAGTCAAGCTATCGAGCAAATTCGCGGTGGTCAAAAAGTGAATGATCAAAATGCGGAAGAACTTCGCCAAGCG
TTAGAGAAATTTACCATTGATCTGACGGAACGTGCAGAGCAGGGCAAACTTGACCCTGTGATTGGACGTGACGATGAAAT
TCGTCGCACCATCCAAGTATTGCAGCGTCGAACCAAAAACAACCCCGTGATCATTGGTGAACCAGGTGTTGGTAAAACCG
CTATTGTTGAAGGTTTAGCACAACGCATCATCAATAACGAGGTGCCCGAAGGTCTGCGTGGTCGCCGAGTGTTGTCACTC
GATATGGGCGCGTTGGTGGCTGGAGCGAAGTACCGTGGTGAATTTGAAGAGCGACTTAAATCGGTATTGAATGAGTTGTC
TAAAGAAGAAGGCAATATCATCCTCTTTATTGATGAGCTTCATACCATGGTTGGCGCCGGTAAAGGTGAAGGTTCGATGG
ATGCGGGCAATATGCTCAAACCCGCATTGGCACGTGGTGAGTTACATTGTGTGGGCGCAACGACACTTGATGAGTATCGT
CAGTATATCGAGAAAGATCCGGCACTTGAGCGCCGCTTCCAAAAAGTGCTGGTTGATGAACCAACAGTGGAAGACACCAT
TGCAATTTTGCGTGGTTTAAAAGAACGCTATGAGCTGCATCATCATGTTGAAATTACCGATCCAGCGATCGTTGCTGCGG
CCAGTTTGTCGCATCGCTATGTTTCTGATCGTCAATTACCGGACAAAGCGATCGACCTCATCGACGAAGCCGCATCCAGT
ATTCGCATGCAGATCGATTCTAAACCCGAAGCTCTGGATAAGTTGGAGCGCAAAATCATCCAACTCAAGATAGAGCAACA
GGCGCTGAGTAATGAACATGATGAAGCGAGTGAAAAACGTCTGCGCTCACTTAACGAAGAGTTAAATGAGAAAGAGCGTG
AGTTTGCTGAGTTAGAGGAAATTTGGAACGCGGAAAAAGCCGCTCTGTCTGGCACTCAGCATATTAAAGCGGCGTTAGAG
CAAGCGCGCATGGATATGGAGTTTGCAAGACGAGCGGGGGATCTTAGCCGCATGTCTGAGCTTCAATATGGCCGTATTCC
AGAGCTTGAGAAGCAACTTGACCTAGCAACGCAAGCGGAAATGCAGGAAATGACCTTGTTGAAAAACAAAGTCACCGATA
ATGAAATTGCGGAAGTGCTTTCCAAGCAAACGGGCATTCCTGTCTCCAAAATGCTTGAAGCAGAAAAAGAAAAGCTGCTT
CGCATGGAAGAGGTGCTGCATAAACGTGTTATTGGGCAGAAAGAGGCGGTGGAAGTTGTTTCAAATGCGATACGTCGCAG
CCGCGCTGGCTTGTCCGATCCCAATAAACCGATTGGTTCGTTCCTATTCTTAGGTCCAACCGGTGTGGGGAAAACGGAAC
TGTGCAAAACGTTGGCGAATTTCATGTTCGACAGTGAAGATGCAATGGTGCGTATCGACATGTCTGAGTTTATGGAGAAA
CACTCAGTGGCACGCTTAGTCGGTGCACCTCCGGGCTATGTGGGTTATGAAGAAGGTGGATATTTAACGGAAGCGGTTCG
ACGTAAGCCTTATTCAGTGATTTTGCTCGATGAAGTGGAAAAGGCACACCCTGATGTGTTCAACATCCTGCTACAAGTCT
TGGATGACGGTCGATTGACGGATGGACAAGGTAGAACAGTGGATTTCCGCAATACCGTGGTCATCATGACATCAAACCTA
GGCTCAAGCCGCATCCAAGAAAACTTCGCTATGTTGGATTACCAAGGTATCAAAGAACAGGTGATGGAAGTGGTGACCAA
ACACTTCAGGCCGGAGTTTTTGAACCGTGTTGATGAGACAGTGGTCTTCCACCCACTTAGTCAAGATCATATTAAGTCGA
TCGCAGCTATTCAACTTAACCGCTTGGCGAATCGCATGGAAGAGCATGGCTATCAGTTGGAAGTGTCTGATAAAGCGCTC
GAATTGATCGCACAAGTTGGTTTTGACCCGGTTTACGGAGCAAGACCATTGAAACGAGCGATTCAGCAAAGTATCGAAAA
CCCGCTGGCGAAATCTATTTTGGCAGGTTCAGTGCTACCGGATAAGAAAATACAGCTTATCGTCAACAACGACCAAATTG
TGGCACACCAATAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-845)

• AAA lid domain (AAA_lid_9) (342-444)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-335)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.713	100	0.473
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.657	100	0.417
clpE	Streptococcus mutans UA159	48.159	79.23	0.382
clpE	Streptococcus pneumoniae D39	48.154	78.996	0.38
clpE	Streptococcus pneumoniae Rx1	48.154	78.996	0.38
clpE	Streptococcus pneumoniae R6	48.154	78.996	0.38
clpC	Lactococcus lactis subsp. cremoris KW2	46.299	80.397	0.372