Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FORC36_RS00640 Genome accession   NZ_CP015512
Coordinates   139596..141677 (-) Length   693 a.a.
NCBI ID   WP_044023953.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_036     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 134596..146677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC36_RS00620 (FORC36_0111) greB 135065..135547 (+) 483 WP_013572566.1 transcription elongation factor GreB -
  FORC36_RS00625 (FORC36_0112) ompR 135747..136466 (+) 720 WP_011078925.1 two-component system response regulator OmpR -
  FORC36_RS00630 (FORC36_0113) envZ 136559..137857 (+) 1299 WP_011149224.1 two-component system sensor histidine kinase EnvZ -
  FORC36_RS00635 (FORC36_0114) - 137934..139340 (-) 1407 WP_013572565.1 uracil-xanthine permease family protein -
  FORC36_RS00640 (FORC36_0115) recG 139596..141677 (-) 2082 WP_044023953.1 ATP-dependent DNA helicase RecG Machinery gene
  FORC36_RS00645 (FORC36_0116) trmH 141837..142523 (-) 687 WP_013572563.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  FORC36_RS00650 (FORC36_0117) spoT 142611..144731 (-) 2121 WP_011078920.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  FORC36_RS00655 (FORC36_0118) rpoZ 144766..145038 (-) 273 WP_011078919.1 DNA-directed RNA polymerase subunit omega -
  FORC36_RS00660 (FORC36_0119) gmk 145166..145789 (-) 624 WP_011078918.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76794.90 Da        Isoelectric Point: 7.5816

>NTDB_id=153990 FORC36_RS00640 WP_044023953.1 139596..141677(-) (recG) [Vibrio vulnificus strain FORC_036]
MSAQLLSAVPLTSLSGVGAKVAEKLEKIGLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGNVMQVDTLFGKRKM
LTVKLSDGNGTITLRFFNFTAAMKNNFAEGKLVHAYGEIKRGNMGLEIVHPDYKFFAPTQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTDQALALLDKAAVQELLPAGLYDQQLTMGQALHIIHRPSPEINLELFDEGKHPAQVRLIMEELLAQNLSMLAVR
SKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDMQKAHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGKAKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHACL
NEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVP
NASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRAARYIHHNYPQNAAAIIERWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=153990 FORC36_RS00640 WP_044023953.1 139596..141677(-) (recG) [Vibrio vulnificus strain FORC_036]
ATGTCTGCCCAACTGTTATCTGCTGTCCCCCTCACGTCCCTCAGTGGGGTCGGTGCTAAGGTGGCTGAAAAACTGGAGAA
AATTGGCTTAAGCAGCGTGCAAGACCTGCTGTTTCACTTGCCACTTCGTTACGAAGACCGCACCCGCATCTACCCGATTG
CCAAATTGCATGCTGGATTGTGGGCCGCTGTGCAGGGCAATGTGATGCAAGTGGATACCTTGTTTGGTAAACGCAAGATG
TTGACGGTGAAGCTCAGCGACGGGAATGGCACCATCACGTTGCGTTTTTTCAACTTTACCGCGGCAATGAAAAACAATTT
TGCTGAAGGTAAGTTAGTACACGCTTACGGCGAAATTAAGCGCGGTAATATGGGGCTGGAGATCGTTCACCCAGACTACA
AGTTTTTCGCCCCAACGCAGAAGCCCGATGTGGAACAAAGCTTAACGCCTGTTTATCCTACCACCGATGGCTTAAGGCAA
ATCACGCTGCGTAACCTCACAGACCAAGCCCTCGCCCTGCTCGATAAAGCCGCGGTTCAAGAGTTACTGCCTGCCGGGTT
GTATGACCAACAACTGACCATGGGGCAAGCGCTGCACATTATCCATCGTCCTTCGCCGGAGATTAATCTGGAACTGTTCG
ACGAAGGGAAGCACCCTGCCCAAGTTCGCTTAATTATGGAAGAGTTGCTGGCCCAGAACTTATCCATGCTCGCCGTGCGC
AGCAAAGGTCAGCAAGATGTCGCGTTGCCACTGCCCCCCGTCCACCAGCTTAAACAACAGCTGTTAGCTCAACTGCCTTT
TTCACCGACCAATGCCCAAGCGCGAGTGGTACAAGAAATTGAAGAAGACATGCAAAAAGCGCATCCGATGATGCGTTTGG
TGCAAGGGGATGTCGGCTCGGGTAAAACCTTAGTGGCAGCCTTGGCCGCGGTACGCGCTATCGAACATGGCTACCAAGTG
GCGCTGATGGCGCCCACCGAACTTCTGGCCGAGCAGCACGCGATCAACTTCGCCAATTGGTTTGAAAAAATGGGCATTCC
CGTTGGCTGGCTCGCTGGCAAGCTCAAAGGTAAAGCCAAAGAAGCCGAATTAGCCCGCATTGCCAGTGGCGAAGCGAAAA
TGGTGGTCGGGACACATGCGCTGTTCCAAGAACACGTGGTGTTTGACCATCTTGCTCTTGTGATCATTGATGAACAGCAC
CGCTTTGGCGTGCATCAACGCTTGGAACTGCGCGAAAAAGGCGCCAAACAAGGCGCTTACCCACATCAACTGATCATGAC
TGCTACACCGATCCCTCGCACATTGGCCATGACCGCTTATGCCGATTTGGAAACATCGGTGATCGACGAGTTACCGCCGG
GACGAACCCCTATCCAAACCGTCGCGATTCCCGACACCAAACGCGAGGACATTGTCGAGCGCATTCGTCATGCCTGCCTC
AATGAGGGTAAGCAGGCGTATTGGGTCTGTACCCTGATTGATGAATCGGAAGTATTGGAAGCCCAAGCGGCAGCAGAAAC
CGCCGAAGAGCTGCAACGTAAATTGCCTGATGTGCGCATTGGTTTGGTGCACGGCCGAATGAAACCAGCTGAAAAACAAG
CGGTGATGCAAGCTTTCAAAAACAATGAATTGCATCTTTTGGTGGCCACCACAGTGATCGAAGTCGGTGTCGATGTGCCC
AACGCCAGCTTGATGATCATCGAAAACCCCGAGCGCTTGGGTCTCGCACAATTGCACCAGTTGCGCGGTCGCGTGGGTCG
AGGCTCGGTAGCAAGCCACTGCGTATTGCTCTATCACGCTCCGCTGTCCAAAACGGCGCAAAAGCGCCTCTCGGTGCTGC
GCGAAAGTAACGATGGTTTCGTCATTGCTCAGCGCGACCTTGAGATCCGCGGGCCAGGTGAGCTGCTCGGCACCAAACAA
ACCGGCCTAGCGGATTTCAAAATTGCCGATCTCGTCCGCGACCAGCGACTGATCCCCGAAGTTCAGCGCGCTGCACGCTA
CATTCACCACAATTACCCACAAAATGCCGCCGCGATTATTGAACGCTGGTTGGGCGAGCGTGATATTTATTCTAAGGCGT
GA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-172)

DEAD/DEAH box helicase (DEAD)

(271-433)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.405

96.97

0.479
  recG/mmsA Streptococcus pneumoniae R6

40.238

96.825

0.39
  recG/mmsA Streptococcus pneumoniae R36A

40.238

96.825

0.39
  recG Bacillus subtilis subsp. subtilis str. 168

38.714

96.537

0.374