Detailed information NTG0153800

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AKN91_RS09285
• Genome accession: NZ_CP012362
• Coordinates: 1932280..1933179 (+)
• Length: 299 a.a.
• NCBI ID: WP_053105046.1
• Uniprot ID: -
• Organism: Thiopseudomonas alkaliphila strain D3318
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1927280..1938179

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AKN91_RS09260 (AKN91_09260)	-	1927399..1927815 (+)	417	WP_053103338.1	PACE efflux transporter	-
AKN91_RS09265 (AKN91_09265)	elbB	1927858..1928511 (+)	654	WP_053105042.1	isoprenoid biosynthesis glyoxalase ElbB	-
AKN91_RS09270 (AKN91_09270)	-	1928582..1929091 (-)	510	WP_053105043.1	pilin	-
AKN91_RS09275 (AKN91_09275)	pilB	1929362..1931053 (+)	1692	WP_053109899.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AKN91_RS09280 (AKN91_09280)	pilC	1931059..1932276 (+)	1218	WP_053105045.1	type II secretion system F family protein	Machinery gene
AKN91_RS09285 (AKN91_09285)	pilD	1932280..1933179 (+)	900	WP_053105046.1	A24 family peptidase	Machinery gene
AKN91_RS09290 (AKN91_09290)	-	1933387..1933668 (-)	282	WP_053109901.1	GIY-YIG nuclease family protein	-
AKN91_RS09295 (AKN91_09295)	-	1933933..1934922 (-)	990	WP_053105048.1	hypothetical protein	-
AKN91_RS09300 (AKN91_09300)	-	1935089..1936300 (-)	1212	WP_053106018.1	NAD(P)/FAD-dependent oxidoreductase	-
AKN91_RS09305 (AKN91_09305)	-	1936297..1936755 (-)	459	WP_053103346.1	YiiD C-terminal domain-containing protein	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 32758.30 Da
• Isoelectric Point: 8.1041

>NTDB_id=153800 AKN91_RS09285 WP_053105046.1 1932280..1933179(+) (pilD) [Thiopseudomonas alkaliphila strain D3318]
MSDLLGLLQQELALFIALASLLGLLAGSFINVVVYRLPKMLQADWQQQAKVILAEAQPAVAARPEPDSTSPRFNLLVPRS
ACPRCQHVIKPWENIPLLSWLALKGKCSGCQQIISKRYPLVELASGILSAVVAWRFGFGLPAMAILLLTWGLLTMSLIDA
DHQLLPDILVLPLLWLGLLLNTQSMFVSLSDAVLGVAIGYLSLWSIYWLFKLIMGKEGMGYGDFKLLAMLGAWGGWQVLL
LTILLSSLVGAILGIIILRLQKEGIEKPIPYGPYLAVAGWIALLWGNQITQAYLEFAGL

Nucleotide

• Length: 900 bp

>NTDB_id=153800 AKN91_RS09285 WP_053105046.1 1932280..1933179(+) (pilD) [Thiopseudomonas alkaliphila strain D3318]
ATGAGTGATTTGCTTGGGTTACTACAGCAAGAGTTAGCTTTATTTATAGCTCTGGCTTCACTTTTAGGGTTATTAGCTGG
CAGCTTTATCAATGTGGTGGTATATCGCCTACCAAAAATGCTGCAGGCCGACTGGCAACAACAAGCTAAAGTAATTCTAG
CCGAAGCCCAGCCAGCGGTAGCTGCACGCCCAGAGCCTGATTCTACGAGTCCACGTTTTAACTTATTGGTACCACGCTCA
GCCTGCCCCCGTTGCCAGCATGTGATTAAGCCTTGGGAGAATATTCCGTTGCTTAGTTGGCTAGCGCTGAAAGGTAAGTG
CTCAGGCTGTCAGCAAATTATTAGTAAGCGCTATCCCTTGGTGGAGCTGGCCAGCGGCATTTTATCGGCAGTAGTGGCCT
GGAGATTTGGCTTTGGCCTACCAGCTATGGCTATATTGCTATTGACCTGGGGGCTACTGACGATGAGCCTGATTGACGCT
GATCATCAACTGCTTCCGGATATTTTAGTGTTGCCGTTACTTTGGCTGGGCTTGCTGCTAAATACCCAGTCTATGTTTGT
CAGCTTAAGTGATGCGGTATTGGGAGTAGCTATCGGTTATCTAAGTCTATGGAGTATTTATTGGCTATTTAAGCTAATTA
TGGGCAAAGAAGGCATGGGTTACGGTGACTTTAAGTTGCTGGCGATGCTGGGCGCTTGGGGTGGCTGGCAAGTCTTATTG
CTAACAATTTTACTGTCTTCGCTGGTGGGCGCAATTTTAGGCATTATTATTTTGCGCTTACAAAAAGAAGGCATAGAAAA
GCCTATTCCCTATGGCCCTTACCTCGCCGTCGCCGGATGGATCGCCTTACTATGGGGCAACCAAATCACCCAAGCTTATT
TGGAGTTTGCGGGGCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-136)

• Type IV leader peptidase family (Peptidase_A24) (147-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.035	95.318	0.515
pilD	Acinetobacter baumannii D1279779	49.492	98.662	0.488
pilD	Acinetobacter nosocomialis M2	48.814	98.662	0.482
pilD	Vibrio campbellii strain DS40M4	50.709	94.314	0.478
pilD	Neisseria gonorrhoeae MS11	45.126	92.642	0.418