Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   AS891_RS08095 Genome accession   NZ_CP015375
Coordinates   1566967..1567971 (+) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis subsp. subtilis strain KCTC 3135     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1561967..1572971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS891_RS08070 (AS891_08065) murC 1562661..1563959 (+) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -
  AS891_RS08075 (AS891_08070) ytxG 1564121..1564543 (+) 423 WP_003229276.1 DUF948 domain-containing protein -
  AS891_RS08080 (AS891_08075) ytxH 1564574..1565029 (+) 456 WP_004398549.1 YtxH domain-containing protein -
  AS891_RS08085 (AS891_08080) ytxJ 1565053..1565379 (+) 327 WP_003229280.1 bacillithiol system redox-active protein YtxJ -
  AS891_RS08090 (AS891_08085) aroX 1565615..1566691 (+) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  AS891_RS08095 (AS891_08090) ccpA 1566967..1567971 (+) 1005 WP_003229285.1 catabolite control protein A Regulator
  AS891_RS08100 (AS891_08095) motP 1568034..1568852 (+) 819 WP_004398692.1 flagellar motor protein MotP -
  AS891_RS08105 (AS891_08100) motS 1568842..1569570 (+) 729 WP_003229290.1 flagellar motor protein MotS -
  AS891_RS08110 (AS891_08105) acuC 1569581..1570744 (-) 1164 WP_004398517.1 acetoin utilization protein AcuC -
  AS891_RS08115 (AS891_08110) acuB 1570741..1571385 (-) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  AS891_RS08120 (AS891_08115) acuA 1571412..1572044 (-) 633 WP_003229296.1 acetoin utilization protein acetyltransferase AcuA -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=153603 AS891_RS08095 WP_003229285.1 1566967..1567971(+) (ccpA) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=153603 AS891_RS08095 WP_003229285.1 1566967..1567971(+) (ccpA) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCTCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATCGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTTAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503