Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | A5479_RS06475 | Genome accession | NZ_CP015344 |
| Coordinates | 1429796..1431280 (-) | Length | 494 a.a. |
| NCBI ID | WP_027224903.1 | Uniprot ID | I7I3L2 |
| Organism | Legionella pneumophila strain D-7630 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1424796..1436280
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A5479_RS06470 (A5479_06470) | - | 1427681..1429663 (+) | 1983 | WP_014843768.1 | hypothetical protein | - |
| A5479_RS06475 (A5479_06475) | pilB | 1429796..1431280 (-) | 1485 | WP_027224903.1 | GspE family T2SS ATPase variant LspE | Machinery gene |
| A5479_RS06480 (A5479_06480) | lspD | 1431284..1433659 (-) | 2376 | WP_027224904.1 | GspD family T2SS secretin variant LspD | - |
| A5479_RS06485 (A5479_06485) | - | 1433832..1434860 (+) | 1029 | WP_027224905.1 | Gfo/Idh/MocA family protein | - |
Sequence
Protein
Download Length: 494 a.a. Molecular weight: 55114.46 Da Isoelectric Point: 5.7442
>NTDB_id=153374 A5479_RS06475 WP_027224903.1 1429796..1431280(-) (pilB) [Legionella pneumophila strain D-7630]
MENEEKSLKIPYSFAKSNGIVVGEIQENLAIVYHLPNTPLQAFAEIKRLLQCELDLKQVDESTFQQHLANIYQSKSSILD
AAEGMEEDMDLSMLASQLPVSEDLLENQDDAPIIRLLNALFTQAIKQKASDIHIETYEDRVLVRNRIDGVLQEVLEIQRA
IAPLVISRVKVMAKLDIAEKRIPQDGRISLRIGGHNIDVRVSTLPSNHGERVVLRILDKQATQLDLNLLGMPEHTLKTVR
QMIAEPHGIILVTGPTGSGKTTSLYAMLTELNQVTRNILTIEDPIEYDLPGVGQTQVNTKVQMTFAKGLRAILRQDPDVV
MIGEIRDLETAEIAVQASLTGHLVLSTLHTNTALGALTRLHDMGVESFLLSSSIVGLIAQRLVRKLCSHCKTPHELRHEE
KELMGLKPDADVSKVFEPKGCDSCNHLGYKGRTGIYELIIVDETLRGMIHRNENIQTMENYLRPTTPSIREDGFKRVLCG
DTSLAEILRVTSQN
MENEEKSLKIPYSFAKSNGIVVGEIQENLAIVYHLPNTPLQAFAEIKRLLQCELDLKQVDESTFQQHLANIYQSKSSILD
AAEGMEEDMDLSMLASQLPVSEDLLENQDDAPIIRLLNALFTQAIKQKASDIHIETYEDRVLVRNRIDGVLQEVLEIQRA
IAPLVISRVKVMAKLDIAEKRIPQDGRISLRIGGHNIDVRVSTLPSNHGERVVLRILDKQATQLDLNLLGMPEHTLKTVR
QMIAEPHGIILVTGPTGSGKTTSLYAMLTELNQVTRNILTIEDPIEYDLPGVGQTQVNTKVQMTFAKGLRAILRQDPDVV
MIGEIRDLETAEIAVQASLTGHLVLSTLHTNTALGALTRLHDMGVESFLLSSSIVGLIAQRLVRKLCSHCKTPHELRHEE
KELMGLKPDADVSKVFEPKGCDSCNHLGYKGRTGIYELIIVDETLRGMIHRNENIQTMENYLRPTTPSIREDGFKRVLCG
DTSLAEILRVTSQN
Nucleotide
Download Length: 1485 bp
>NTDB_id=153374 A5479_RS06475 WP_027224903.1 1429796..1431280(-) (pilB) [Legionella pneumophila strain D-7630]
ATGGAAAATGAAGAAAAATCACTTAAAATTCCTTATAGTTTTGCCAAAAGCAATGGAATTGTTGTGGGAGAAATACAAGA
AAATCTGGCTATTGTCTATCACTTACCTAACACACCACTGCAAGCTTTCGCTGAGATAAAGCGATTATTACAATGTGAAC
TTGATCTAAAACAAGTCGATGAATCCACTTTTCAGCAACATTTAGCCAATATTTACCAATCTAAATCTTCAATACTGGAT
GCTGCAGAAGGCATGGAAGAAGATATGGATTTATCCATGTTGGCCAGTCAACTTCCCGTCAGTGAAGACTTATTGGAAAA
CCAAGACGATGCCCCAATTATCCGCTTACTGAACGCTCTGTTTACCCAAGCGATTAAACAAAAAGCATCTGATATTCACA
TTGAAACTTATGAAGACAGAGTATTGGTGCGCAATCGAATTGATGGTGTTCTACAAGAGGTCCTTGAAATTCAACGAGCT
ATCGCTCCTTTGGTCATTTCCAGAGTTAAGGTGATGGCCAAATTGGATATCGCCGAAAAGAGAATTCCTCAAGATGGTCG
AATTTCATTGCGTATAGGTGGACACAATATTGATGTCAGGGTCTCAACTTTACCCTCAAACCATGGAGAACGAGTGGTTT
TAAGGATATTGGATAAACAAGCTACTCAACTGGATTTAAATCTTTTGGGTATGCCTGAACATACATTAAAAACAGTACGA
CAAATGATTGCTGAACCTCATGGCATTATTTTAGTCACTGGCCCAACAGGTTCAGGCAAGACAACCTCTCTCTATGCTAT
GCTCACCGAACTAAATCAGGTGACTCGTAATATTTTAACCATTGAAGATCCAATTGAATATGACCTGCCTGGTGTAGGAC
AAACGCAGGTTAATACTAAAGTTCAAATGACTTTTGCCAAAGGATTAAGGGCCATATTACGTCAAGATCCGGATGTTGTC
ATGATAGGTGAGATCCGTGATTTGGAAACAGCTGAAATTGCTGTTCAAGCCAGCTTAACAGGGCATTTGGTACTATCAAC
CCTTCATACCAATACCGCATTGGGAGCATTAACTCGCCTGCATGATATGGGAGTTGAGTCTTTTTTATTGTCATCCAGTA
TAGTCGGGCTCATTGCGCAACGTTTGGTAAGGAAATTATGCTCTCATTGCAAAACACCTCATGAATTAAGACATGAAGAA
AAGGAGTTAATGGGTCTTAAACCTGATGCTGATGTATCTAAAGTCTTTGAACCCAAAGGATGCGACTCATGCAACCACTT
GGGTTATAAAGGCAGAACAGGAATTTATGAATTAATTATCGTAGATGAAACCCTGAGAGGAATGATTCATCGTAATGAAA
ATATTCAAACAATGGAAAATTATTTACGACCAACCACACCAAGCATACGTGAAGATGGTTTTAAAAGAGTATTATGTGGC
GATACGTCACTTGCAGAAATTTTAAGAGTAACCTCTCAAAACTAA
ATGGAAAATGAAGAAAAATCACTTAAAATTCCTTATAGTTTTGCCAAAAGCAATGGAATTGTTGTGGGAGAAATACAAGA
AAATCTGGCTATTGTCTATCACTTACCTAACACACCACTGCAAGCTTTCGCTGAGATAAAGCGATTATTACAATGTGAAC
TTGATCTAAAACAAGTCGATGAATCCACTTTTCAGCAACATTTAGCCAATATTTACCAATCTAAATCTTCAATACTGGAT
GCTGCAGAAGGCATGGAAGAAGATATGGATTTATCCATGTTGGCCAGTCAACTTCCCGTCAGTGAAGACTTATTGGAAAA
CCAAGACGATGCCCCAATTATCCGCTTACTGAACGCTCTGTTTACCCAAGCGATTAAACAAAAAGCATCTGATATTCACA
TTGAAACTTATGAAGACAGAGTATTGGTGCGCAATCGAATTGATGGTGTTCTACAAGAGGTCCTTGAAATTCAACGAGCT
ATCGCTCCTTTGGTCATTTCCAGAGTTAAGGTGATGGCCAAATTGGATATCGCCGAAAAGAGAATTCCTCAAGATGGTCG
AATTTCATTGCGTATAGGTGGACACAATATTGATGTCAGGGTCTCAACTTTACCCTCAAACCATGGAGAACGAGTGGTTT
TAAGGATATTGGATAAACAAGCTACTCAACTGGATTTAAATCTTTTGGGTATGCCTGAACATACATTAAAAACAGTACGA
CAAATGATTGCTGAACCTCATGGCATTATTTTAGTCACTGGCCCAACAGGTTCAGGCAAGACAACCTCTCTCTATGCTAT
GCTCACCGAACTAAATCAGGTGACTCGTAATATTTTAACCATTGAAGATCCAATTGAATATGACCTGCCTGGTGTAGGAC
AAACGCAGGTTAATACTAAAGTTCAAATGACTTTTGCCAAAGGATTAAGGGCCATATTACGTCAAGATCCGGATGTTGTC
ATGATAGGTGAGATCCGTGATTTGGAAACAGCTGAAATTGCTGTTCAAGCCAGCTTAACAGGGCATTTGGTACTATCAAC
CCTTCATACCAATACCGCATTGGGAGCATTAACTCGCCTGCATGATATGGGAGTTGAGTCTTTTTTATTGTCATCCAGTA
TAGTCGGGCTCATTGCGCAACGTTTGGTAAGGAAATTATGCTCTCATTGCAAAACACCTCATGAATTAAGACATGAAGAA
AAGGAGTTAATGGGTCTTAAACCTGATGCTGATGTATCTAAAGTCTTTGAACCCAAAGGATGCGACTCATGCAACCACTT
GGGTTATAAAGGCAGAACAGGAATTTATGAATTAATTATCGTAGATGAAACCCTGAGAGGAATGATTCATCGTAATGAAA
ATATTCAAACAATGGAAAATTATTTACGACCAACCACACCAAGCATACGTGAAGATGGTTTTAAAAGAGTATTATGTGGC
GATACGTCACTTGCAGAAATTTTAAGAGTAACCTCTCAAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Vibrio cholerae strain A1552 |
42.647 |
96.356 |
0.411 |
| pilB | Acinetobacter baumannii D1279779 |
44.712 |
84.211 |
0.377 |
| pilB | Vibrio campbellii strain DS40M4 |
45.813 |
82.186 |
0.377 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
45.588 |
82.591 |
0.377 |
| pilB | Acinetobacter baylyi ADP1 |
47.044 |
78.745 |
0.37 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
41.705 |
87.854 |
0.366 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
45.524 |
79.15 |
0.36 |