Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF28666_RS07055 | Genome accession | NZ_CP012321 |
| Coordinates | 1445349..1446395 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain DSM 28666 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1418835..1495038 | 1445349..1446395 | within | 0 |
Gene organization within MGE regions
Location: 1418835..1495038
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF28666_RS06930 (CDIF28666_01354) | rimP | 1421717..1422178 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CDIF28666_RS06935 (CDIF28666_01355) | nusA | 1422208..1423362 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDIF28666_RS06940 (CDIF28666_01356) | rnpM | 1423369..1423650 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIF28666_RS06945 (CDIF28666_01357) | - | 1423640..1423951 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF28666_RS06950 (CDIF28666_01358) | infB | 1423973..1425913 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDIF28666_RS06955 (CDIF28666_01359) | rbfA | 1425956..1426336 (+) | 381 | WP_021371143.1 | 30S ribosome-binding factor RbfA | - |
| CDIF28666_RS06960 (CDIF28666_01360) | - | 1426317..1426994 (+) | 678 | Protein_1247 | DHH family phosphoesterase | - |
| CDIF28666_RS06970 (CDIF28666_01361) | tnpB | 1427634..1428752 (+) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CDIF28666_RS06975 (CDIF28666_01362) | - | 1428870..1429175 (+) | 306 | Protein_1249 | DHH family phosphoesterase | - |
| CDIF28666_RS06980 (CDIF28666_01363) | truB | 1429188..1430093 (+) | 906 | WP_021371144.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF28666_RS06985 (CDIF28666_01364) | - | 1430224..1431153 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF28666_RS06995 (CDIF28666_01365) | rpsO | 1431257..1431514 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF28666_RS07000 (CDIF28666_01366) | - | 1431754..1432599 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDIF28666_RS07005 (CDIF28666_01367) | pnp | 1432724..1434835 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF28666_RS07010 (CDIF28666_01368) | - | 1435101..1435844 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CDIF28666_RS07015 (CDIF28666_01369) | - | 1436002..1437249 (+) | 1248 | WP_021371145.1 | M16 family metallopeptidase | - |
| CDIF28666_RS07020 (CDIF28666_01370) | - | 1437284..1437529 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF28666_RS07025 (CDIF28666_01371) | dapG | 1437539..1438762 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CDIF28666_RS07030 (CDIF28666_01372) | - | 1438875..1439609 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIF28666_RS07035 (CDIF28666_01373) | - | 1439732..1442143 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF28666_RS07040 (CDIF28666_01374) | mnmH | 1442146..1443204 (+) | 1059 | WP_009902410.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF28666_RS07045 (CDIF28666_01375) | rimO | 1443198..1444532 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF28666_RS07050 (CDIF28666_01376) | pgsA | 1444519..1445061 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF28666_RS07055 (CDIF28666_01377) | recA | 1445349..1446395 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIF28666_RS07060 (CDIF28666_01378) | rny | 1446571..1448112 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF28666_RS07065 (CDIF28666_01379) | - | 1448426..1450762 (+) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| CDIF28666_RS07070 (CDIF28666_01380) | - | 1451144..1452925 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| CDIF28666_RS07075 (CDIF28666_01381) | lepB | 1453007..1453537 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| CDIF28666_RS07080 (CDIF28666_01382) | - | 1453577..1454401 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF28666_RS07085 (CDIF28666_01383) | - | 1454658..1455566 (+) | 909 | WP_021371146.1 | tyrosine-type recombinase/integrase | - |
| CDIF28666_RS07090 (CDIF28666_01384) | purB | 1455710..1457155 (+) | 1446 | WP_021363439.1 | adenylosuccinate lyase | - |
| CDIF28666_RS07095 (CDIF28666_01385) | - | 1457466..1457918 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF28666_RS07100 (CDIF28666_01386) | - | 1458253..1459449 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF28666_RS07105 (CDIF28666_01387) | galT | 1459834..1460784 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF28666_RS07110 (CDIF28666_01388) | - | 1460945..1461697 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CDIF28666_RS07115 (CDIF28666_01389) | - | 1461789..1462565 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| CDIF28666_RS07120 (CDIF28666_01390) | - | 1462880..1464778 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIF28666_RS07125 (CDIF28666_01391) | - | 1464906..1466027 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| CDIF28666_RS07130 (CDIF28666_01392) | - | 1466226..1466558 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF28666_RS07135 (CDIF28666_01393) | - | 1466545..1467603 (+) | 1059 | WP_032509638.1 | DUF1700 domain-containing protein | - |
| CDIF28666_RS07140 (CDIF28666_01394) | - | 1467596..1468666 (+) | 1071 | WP_009902421.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF28666_RS07145 (CDIF28666_01395) | - | 1468768..1469304 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIF28666_RS07150 (CDIF28666_01396) | - | 1469420..1470127 (+) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF28666_RS07155 (CDIF28666_01397) | - | 1470129..1470845 (+) | 717 | WP_021371148.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF28666_RS07160 (CDIF28666_01398) | - | 1470847..1471605 (+) | 759 | WP_021360482.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF28666_RS07165 (CDIF28666_01399) | - | 1471740..1473128 (+) | 1389 | WP_021371149.1 | two-component system sensor histidine kinase | - |
| CDIF28666_RS07170 (CDIF28666_01400) | - | 1473204..1474025 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| CDIF28666_RS07175 (CDIF28666_01401) | - | 1474276..1475430 (+) | 1155 | WP_021371150.1 | amidase domain-containing protein | - |
| CDIF28666_RS07180 (CDIF28666_01402) | - | 1475613..1475813 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF28666_RS07185 (CDIF28666_01403) | - | 1476234..1476662 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF28666_RS07190 (CDIF28666_01404) | - | 1476805..1477560 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF28666_RS07200 (CDIF28666_01406) | - | 1478261..1478767 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF28666_RS07205 (CDIF28666_01407) | - | 1478849..1479169 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF28666_RS07210 (CDIF28666_01408) | - | 1479338..1479535 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIF28666_RS07215 (CDIF28666_01409) | - | 1479640..1480080 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| CDIF28666_RS07220 (CDIF28666_01410) | - | 1480329..1480772 (+) | 444 | WP_021360485.1 | phage tail terminator family protein | - |
| CDIF28666_RS07225 (CDIF28666_01411) | - | 1480777..1481841 (+) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF28666_RS07230 (CDIF28666_01412) | - | 1481855..1482283 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| CDIF28666_RS07235 (CDIF28666_01413) | - | 1482397..1482843 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| CDIF28666_RS07240 (CDIF28666_01414) | - | 1482870..1483037 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| CDIF28666_RS07245 (CDIF28666_01415) | - | 1483037..1485490 (+) | 2454 | WP_070421145.1 | hypothetical protein | - |
| CDIF28666_RS07250 (CDIF28666_01416) | - | 1485490..1485912 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| CDIF28666_RS07255 (CDIF28666_01417) | - | 1486194..1487723 (+) | 1530 | WP_021371152.1 | NlpC/P60 family protein | - |
| CDIF28666_RS07260 (CDIF28666_01418) | - | 1487739..1488065 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| CDIF28666_RS07265 (CDIF28666_01419) | - | 1488065..1488493 (+) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| CDIF28666_RS07270 (CDIF28666_01420) | - | 1488486..1489538 (+) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| CDIF28666_RS07275 (CDIF28666_01421) | - | 1489535..1490233 (+) | 699 | WP_003438451.1 | putative phage tail protein | - |
| CDIF28666_RS07280 (CDIF28666_01422) | - | 1490234..1491220 (+) | 987 | WP_009902440.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=153367 CDIF28666_RS07055 WP_003428218.1 1445349..1446395(+) (recA) [Clostridioides difficile strain DSM 28666]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=153367 CDIF28666_RS07055 WP_003428218.1 1445349..1446395(+) (recA) [Clostridioides difficile strain DSM 28666]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.