Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   A5478_RS10180 Genome accession   NZ_CP015342
Coordinates   2276987..2279059 (+) Length   690 a.a.
NCBI ID   WP_027224822.1    Uniprot ID   -
Organism   Legionella pneumophila strain D-7632     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2271987..2284059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5478_RS10155 (A5478_10155) folB 2272836..2273174 (+) 339 WP_011214275.1 dihydroneopterin aldolase -
  A5478_RS10160 (A5478_10160) - 2273214..2273909 (-) 696 WP_027224820.1 SPOR domain-containing protein -
  A5478_RS10165 (A5478_10165) argS 2273909..2275669 (-) 1761 WP_027224821.1 arginine--tRNA ligase -
  A5478_RS10170 (A5478_10170) - 2275782..2276840 (-) 1059 WP_011214278.1 AI-2E family transporter -
  A5478_RS10180 (A5478_10180) recG 2276987..2279059 (+) 2073 WP_027224822.1 ATP-dependent DNA helicase RecG Machinery gene
  A5478_RS10185 (A5478_10185) - 2279572..2280714 (+) 1143 WP_027224823.1 cation diffusion facilitator family transporter -
  A5478_RS10190 (A5478_10190) - 2280830..2281588 (+) 759 WP_027224824.1 ZIP family metal transporter -
  A5478_RS10195 (A5478_10195) - 2281581..2282183 (+) 603 WP_014842076.1 Maf family protein -
  A5478_RS10200 (A5478_10200) eno 2282215..2283483 (+) 1269 WP_013101649.1 phosphopyruvate hydratase -
  A5478_RS10205 (A5478_10205) ftsB 2283705..2283974 (+) 270 WP_010947754.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 690 a.a.        Molecular weight: 77990.20 Da        Isoelectric Point: 8.0896

>NTDB_id=153259 A5478_RS10180 WP_027224822.1 2276987..2279059(+) (recG) [Legionella pneumophila strain D-7632]
MLSNSCEYLTGVGPTIAAKLAKCGIFTIQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVCKTEIKYGKRMMLNCYV
EDKTGVVNLRFFHFNKQQIQALNNSTMIRAFGEVRGFNNQLEMIHPEYQLIDQESDFHVEETLTPIYPSTQGLTQARLRQ
LVKIALEQSEHELHQLEWMSEKQLLENNFYDLGEAIKLLHNPPPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFARQS
RSKLQAPAILFDNAIHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGAGKTIIAALAALQAISQGFQVAF
MAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKTTERKNALTALQDNSCQLIVGTHALFQEQVEFARLGLVIIDEQHRF
GVEQRLLLQQKGQLNQLIPHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAIANG
KQAYWVCTLIEESEKLQCIAATDTSKKLQEQLSFARVGLVHGRMKALEKEATMAAFKQGEIDLLVATTVIEVGVDVPNAS
LMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSPLSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTRQTGF
RQFKIANLQRDKTLFAILRPIAKQLVLEKTAIARQITQRWLGNFEQFLQS

Nucleotide


Download         Length: 2073 bp        

>NTDB_id=153259 A5478_RS10180 WP_027224822.1 2276987..2279059(+) (recG) [Legionella pneumophila strain D-7632]
GTGCTGAGTAACTCTTGTGAATATTTAACTGGCGTCGGCCCAACCATTGCAGCAAAACTTGCTAAATGTGGAATTTTCAC
GATACAAGACTTGCTTTTCCACCTGCCTTATAAATATCAAGACAGAACCAGGATAACACCAATTCAGGATTTGCGCTCCA
ATGAATGGTGCGTTATCGCGGGGCATGTATGCAAAACTGAAATAAAATACGGCAAGAGGATGATGTTGAATTGTTATGTG
GAAGATAAAACAGGAGTAGTTAACCTTCGTTTTTTTCATTTCAATAAGCAGCAAATTCAGGCTTTGAATAATAGCACCAT
GATTCGAGCTTTTGGCGAAGTCCGCGGATTTAACAACCAGTTGGAGATGATTCATCCAGAATATCAACTAATTGACCAAG
AATCAGATTTCCACGTGGAAGAAACGCTTACGCCAATTTATCCATCGACTCAAGGCTTGACTCAAGCCCGATTAAGGCAG
TTAGTTAAAATAGCCCTGGAACAATCTGAACACGAACTTCATCAATTGGAATGGATGAGTGAAAAACAATTACTGGAAAA
CAATTTTTATGATTTGGGCGAAGCCATTAAATTACTACACAACCCCCCACCTGATATCTCCCTCTCCAACCTCGAAGCCG
GCGAACATCCTGCTCTCAAGCGGTTAATATTTGATGAATTACTGGCACAGCAGCTCAGTATGCAATTTGCAAGACAGTCA
CGCAGCAAACTCCAAGCTCCCGCTATACTTTTCGATAATGCAATTCATAAACGTTTTATCGAATCATTGCCATTCAGTCT
TACAAACGCACAACAACGGGTTTTTAAAGAAATCAGCGTTGATTTAACTCAAAGCAAACCCATGCTTCGTTTGCTGCAAG
GAGATGTTGGGGCGGGTAAAACCATTATCGCGGCACTAGCCGCCCTTCAAGCCATTTCACAAGGATTTCAGGTTGCTTTT
ATGGCACCAACCGATTTATTAAGTGAACAACATACAAATAGCCTCAGTAAATGGTTAGAACCTATCGGTATTAATGTATT
AAGACTGAGCGGTAAAATGAAAACCACAGAACGAAAAAATGCGCTTACAGCCCTGCAGGACAATAGCTGTCAGCTCATTG
TTGGAACTCATGCCTTATTTCAGGAGCAAGTCGAATTCGCTCGTTTGGGTTTGGTCATTATTGACGAACAACACCGATTT
GGAGTAGAACAACGGCTCCTTCTGCAACAAAAAGGGCAATTAAACCAATTAATTCCTCATCAATTATTAATGACAGCCAC
CCCTATTCCAAGAACCCTGTCAATGTCTCATTTTGCTCATTTGGATATATCGGTCATCGATGAACTACCACCTGGCCGTA
TGCCAATTACAACAGCGGTATTGAACCAGGATAAGCGTGAACTCATTATCGAACGTTTGCAAGCAGCAATCGCCAACGGC
AAACAAGCTTACTGGGTCTGTACCCTTATAGAAGAATCTGAAAAATTACAATGCATAGCAGCAACAGATACCTCAAAAAA
ATTACAAGAACAGCTCTCTTTCGCGCGTGTTGGTCTTGTTCATGGGAGAATGAAAGCGCTTGAAAAAGAAGCTACTATGG
CGGCCTTTAAACAAGGCGAGATTGATTTATTGGTGGCAACTACAGTTATTGAAGTTGGTGTAGATGTTCCTAATGCCAGT
TTAATGATCATTGAAAATGCGGAGCGACTTGGTTTGTCGCAGTTACATCAATTACGCGGGCGCGTCGGCAGAGGTAATAA
TCAATCTCATTGTCTATTACTTTATCAATCTCCTCTATCACAGCAAGGTGCTGAACGTCTCAAGATCATGCGCTCAACAA
CAGACGGTTTTCTAATCTCCGAAAAGGATTTGGAGTTAAGAGGCTCAGGAGAAATATTAGGAACCAGACAAACTGGCTTT
AGACAATTTAAAATAGCTAACTTACAACGCGATAAAACCCTCTTCGCTATTTTACGTCCAATTGCAAAACAACTGGTGCT
GGAAAAAACAGCAATCGCCAGACAAATTACACAACGATGGCTGGGCAATTTTGAACAATTTTTGCAAAGTTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(270-431)

Helicase conserved C-terminal domain (Helicase_C)

(469-586)

RecG wedge domain (RecG_wedge)

(7-164)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(613-668)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

47.774

97.681

0.467
  recG Bacillus subtilis subsp. subtilis str. 168

38.724

97.681

0.378
  recG/mmsA Streptococcus pneumoniae R6

38.831

96.667

0.375
  recG/mmsA Streptococcus pneumoniae R36A

38.831

96.667

0.375

Multiple sequence alignment