Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AFK67_RS18350 Genome accession   NZ_CP012266
Coordinates   3963148..3963690 (-) Length   180 a.a.
NCBI ID   WP_007702264.1    Uniprot ID   -
Organism   Cronobacter dublinensis subsp. dublinensis LMG 23823     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3958148..3968690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFK67_RS18320 (AFK67_18335) soxS 3958308..3958631 (+) 324 WP_004386206.1 superoxide response transcriptional regulator SoxS -
  AFK67_RS18325 (AFK67_18340) - 3958619..3960226 (-) 1608 WP_144421365.1 EAL domain-containing protein -
  AFK67_RS18330 (AFK67_18345) - 3960810..3961088 (+) 279 WP_007712039.1 YjcB family protein -
  AFK67_RS18335 (AFK67_18350) - 3961146..3961490 (-) 345 WP_007712037.1 hypothetical protein -
  AFK67_RS18340 (AFK67_18355) - 3961666..3962712 (-) 1047 WP_007712032.1 GGDEF domain-containing protein -
  AFK67_RS18345 (AFK67_18360) - 3962764..3963117 (+) 354 WP_032966405.1 hypothetical protein -
  AFK67_RS18350 (AFK67_18365) ssb 3963148..3963690 (-) 543 WP_007702264.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AFK67_RS18355 (AFK67_18370) uvrA 3963921..3966746 (+) 2826 WP_007712026.1 excinuclease ABC subunit UvrA -
  AFK67_RS18360 (AFK67_18375) - 3966902..3967345 (+) 444 WP_235047945.1 hypothetical protein -
  AFK67_RS18365 (AFK67_18380) - 3967358..3967702 (+) 345 WP_007712022.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19291.33 Da        Isoelectric Point: 5.2358

>NTDB_id=153114 AFK67_RS18350 WP_007702264.1 3963148..3963690(-) (ssb) [Cronobacter dublinensis subsp. dublinensis LMG 23823]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQIYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQPQQQGGGAQFSGGAQSRPQ
QQAPAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=153114 AFK67_RS18350 WP_007702264.1 3963148..3963690(-) (ssb) [Cronobacter dublinensis subsp. dublinensis LMG 23823]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCGACTTCCGAATCCTGGCGCGACAAGCAGACCGGTGAGATGAAAGAAGTAACCG
AATGGCACAGCGTGGTGCTGTACGGCAAGCTGGCGGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCGCAGATCTACATC
GAAGGTCAGCTGCGCACCCGTAAGTGGCAGGATCAGAGCGGTCAGGATCGCTATTCTACCGAAGTGGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGTGGCGCTCCGGCAGGCGGCAACATGGGCGGCGGCCAGCAGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGCAGCAGGGTGGCGGCGCGCAGTTCAGCGGCGGCGCACAGTCTCGCCCGCAG
CAGCAGGCACCGGCGCCTTCCAACGAACCGCCGATGGACTTTGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.725

100

0.756
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.594
  ssb Neisseria gonorrhoeae MS11

47.283

100

0.483
  ssb Neisseria meningitidis MC58

45.109

100

0.461

Multiple sequence alignment