Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   NX99_RS08320 Genome accession   NZ_CP015282
Coordinates   1785887..1787917 (+) Length   676 a.a.
NCBI ID   WP_257788654.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 27945     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1780887..1792917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS08300 (NX99_08155) - 1782132..1783163 (+) 1032 WP_038676747.1 3-deoxy-7-phosphoheptulonate synthase -
  NX99_RS08305 (NX99_08160) - 1783248..1784276 (+) 1029 WP_038676746.1 3-deoxy-7-phosphoheptulonate synthase -
  NX99_RS08310 (NX99_08165) acpS 1784282..1784635 (+) 354 WP_014632616.1 holo-ACP synthase -
  NX99_RS08315 (NX99_08170) alr 1784663..1785766 (+) 1104 WP_084915304.1 alanine racemase -
  NX99_RS08320 (NX99_08175) recG/mmsA 1785887..1787917 (+) 2031 WP_257788654.1 ATP-dependent DNA helicase RecG Machinery gene
  NX99_RS08325 (NX99_08180) - 1787929..1788435 (+) 507 WP_037611183.1 hypothetical protein -
  NX99_RS08330 (NX99_08185) - 1789056..1789493 (+) 438 WP_084915306.1 hypothetical protein -
  NX99_RS08335 (NX99_08190) - 1789685..1790293 (+) 609 WP_084915308.1 DUF2975 domain-containing protein -
  NX99_RS08340 (NX99_08195) - 1790303..1790515 (+) 213 WP_002884695.1 helix-turn-helix domain-containing protein -
  NX99_RS09980 - 1790566..1790709 (-) 144 WP_173018410.1 hypothetical protein -
  NX99_RS08345 (NX99_08200) - 1790713..1791681 (-) 969 WP_084915310.1 asparaginase -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 75760.05 Da        Isoelectric Point: 5.4693

>NTDB_id=153070 NX99_RS08320 WP_257788654.1 1785887..1787917(+) (recG/mmsA) [Streptococcus salivarius strain ATCC 27945]
MIEDMIQLDSPIADLKGFGPKSAEKFTKLDLHTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFK
RNRLSFKIKQGEAVIAISFFNQPYLVDKIEMGAEVAIFGKWDQKKSAVTGMKVLAQVEDDMQPVYHVAQGVSQAQLIKAI
RAAFDSGALNLLEESLPQVLMDKYRLMGRQEAVRAMHFPKDLAEYKQALRRTKFEELFYFQMNLQVLKAENKSETNGLAI
AYDEAKIKAKIAELPFPLTEAQQRSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGLQSALMVPTEILAE
QHYQSLQGLFPELEVVLLTSGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVTYHRLGLVITDEQHRFGVNQRRIFREK
GDNPDVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIKGELEEDAQVYFISPLIEESEA
LDLKNAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQ
LHQLRGRVGRGHKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNIL
EEARRVASQIVSDPNWRENPDWQVLGAHLRSQGEFD

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=153070 NX99_RS08320 WP_257788654.1 1785887..1787917(+) (recG/mmsA) [Streptococcus salivarius strain ATCC 27945]
ATGATAGAGGATATGATTCAACTAGATTCACCAATTGCGGATTTGAAAGGCTTTGGTCCTAAGTCCGCTGAAAAATTTAC
CAAATTAGATTTGCACACGGTTGGGGACCTCTTGCTTTATTTTCCTTTCCGATATGAAGATTTTAAGAGTAAGTCTATCT
TTGAACTGATGGATGGCGAAAAGGCAGTTATTACGGGAACCGTGGTAACCCCTGCCAATGTGCAGTATTATGGCTTTAAA
CGTAATCGTCTGAGTTTTAAAATCAAGCAAGGAGAGGCAGTGATTGCCATTAGTTTCTTCAACCAGCCTTATCTTGTGGA
CAAGATTGAGATGGGGGCAGAAGTGGCTATTTTTGGCAAATGGGACCAGAAGAAGTCTGCAGTGACTGGCATGAAAGTCT
TGGCTCAAGTTGAGGACGATATGCAGCCAGTCTATCATGTGGCCCAGGGCGTTAGTCAAGCCCAGCTGATAAAGGCTATA
AGGGCAGCTTTTGATAGTGGGGCCTTGAATTTGTTGGAGGAGAGTCTCCCACAGGTGCTTATGGACAAGTATCGTCTTAT
GGGACGCCAAGAGGCTGTGCGTGCTATGCATTTTCCGAAAGATTTGGCTGAATATAAGCAGGCTCTACGTAGGACCAAGT
TTGAGGAGCTCTTTTATTTCCAGATGAACTTACAGGTGCTGAAGGCTGAGAATAAGTCCGAAACCAATGGTCTAGCAATT
GCTTACGATGAAGCTAAAATCAAAGCCAAAATTGCAGAATTACCATTTCCCTTGACAGAAGCCCAACAGCGTAGTTTATC
GGAAATCCTAGCTGATATGAAATCTGGGGCTCATATGAACCGTCTTTTGCAAGGAGATGTGGGTTCAGGGAAAACAGTTA
TCGCTAGTCTGGCCATGTATGGGGCTTATACGGCAGGATTGCAGTCTGCCCTCATGGTACCGACGGAAATCTTAGCAGAG
CAGCACTATCAGAGTTTACAGGGACTTTTTCCTGAGCTAGAGGTAGTGCTCCTAACTTCTGGGATGAAGGCAGCGGACAA
AAAAGTAGCTCTTTCCAAAATCGAATCTGGCGAGGCTCAGATGATTGTGGGGACTCACTCACTGATTCAGGATGCTGTGA
CTTATCACAGGCTTGGGCTAGTAATTACTGATGAGCAGCACCGTTTTGGGGTTAATCAACGTCGTATTTTCCGTGAGAAA
GGTGACAATCCTGATGTCCTTATGATGACAGCGACACCTATCCCTAGGACTTTGGCAATCACTGCCTTTGGGGAGATGGA
TGTGTCAATCATTGACCAGATGCCGGCTGGACGTAAGCCCATTATTACCCGTTGGGTTAAACATGAGCAACTAGATACCG
TACTGACTTGGATTAAGGGCGAGTTGGAAGAAGATGCTCAGGTCTATTTTATCTCACCTCTGATTGAAGAGTCTGAGGCT
CTCGATTTGAAAAATGCGGTGGCCCTTCATCAGGAACTCACAGAGTTCTTTGGGGATTCAGCTACAGTGGCCCTGATGCA
TGGTCGCATGAAAAATGATGAAAAAGACCAAATTATGCAGGACTTCAAGGATAAAAAATCTCAGATTTTAGTATCAACCA
CAGTTATCGAAGTGGGGGTTAATGTGCCAAATGCTACGGTTATGGTCATTATGGATGCCGACCGCTTTGGACTTAGCCAG
CTGCACCAACTTCGTGGCCGTGTAGGTCGTGGCCATAAGCAGTCCTACTGTGTTTTAGTGGCCAATCCTAAAAATGATAC
CGGGAAAAAACGCATGCAGGCCATGTGTGAGACTACGGATGGTTTTGTTCTAGCAGAAGAGGACCTTAAAATGCGTGGTT
CAGGAGAGATCTTTGGAACACGTCAGTCAGGAATTCCTGAATTTCAAGTGGCTGATATTGTGGAAGACTACAATATCTTA
GAAGAAGCAAGGCGCGTGGCCAGCCAAATTGTGTCTGACCCTAACTGGCGTGAGAATCCTGATTGGCAGGTGCTAGGAGC
TCATTTGAGAAGCCAAGGCGAGTTTGATTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(259-416)

RecG wedge domain (RecG_wedge)

(15-162)

Helicase conserved C-terminal domain (Helicase_C)

(463-571)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(598-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.237

99.26

0.707
  recG/mmsA Streptococcus pneumoniae R36A

71.237

99.26

0.707
  recG Bacillus subtilis subsp. subtilis str. 168

49.183

99.556

0.49
  recG Neisseria meningitidis strain C311

39.104

99.112

0.388