Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   AEI00_RS06890 Genome accession   NZ_CP012239
Coordinates   1338198..1339379 (-) Length   393 a.a.
NCBI ID   WP_070248013.1    Uniprot ID   A0AAN3QWG5
Organism   Campylobacter jejuni strain CJ029CC45     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1333198..1344379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI00_RS06860 (AEI00_06895) - 1333743..1334084 (+) 342 WP_032590145.1 hypothetical protein -
  AEI00_RS06865 (AEI00_06900) flgM 1334147..1334344 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  AEI00_RS06870 (AEI00_06905) - 1334386..1334820 (+) 435 WP_002856482.1 flagellar protein FlgN -
  AEI00_RS06875 (AEI00_06910) flgK 1334830..1336656 (+) 1827 WP_052861622.1 flagellar hook-associated protein FlgK -
  AEI00_RS06880 (AEI00_06915) - 1336673..1337437 (+) 765 WP_052861620.1 TIGR02757 family protein -
  AEI00_RS06885 (AEI00_06920) - 1337441..1338205 (+) 765 WP_002855301.1 TSUP family transporter -
  AEI00_RS06890 (AEI00_06925) ctsF 1338198..1339379 (-) 1182 WP_070248013.1 type II secretion system F family protein Machinery gene
  AEI00_RS06895 (AEI00_06930) ctsE 1339376..1340935 (-) 1560 WP_052861618.1 GspE/PulE family protein Machinery gene
  AEI00_RS06900 (AEI00_06935) ctsX 1340925..1341512 (-) 588 WP_052861616.1 hypothetical protein Machinery gene
  AEI00_RS06905 (AEI00_06940) ctsP 1341516..1342124 (-) 609 WP_052861614.1 ATP-binding protein Machinery gene
  AEI00_RS06910 (AEI00_06945) ctsD 1342117..1343529 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI00_RS06915 (AEI00_06950) ctsR 1343507..1343818 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45715.45 Da        Isoelectric Point: 9.2583

>NTDB_id=152844 AEI00_RS06890 WP_070248013.1 1338198..1339379(-) (ctsF) [Campylobacter jejuni strain CJ029CC45]
MKFYEVEFLKNNQNYTKTIKAENLNIAQAKALSKNWKIIDIKEIQKSNFQRLKEENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLETQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFVTHVMLEIYNFLDGYGIFCILLFVIFIVMLILAYKHFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQVFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=152844 AEI00_RS06890 WP_070248013.1 1338198..1339379(-) (ctsF) [Campylobacter jejuni strain CJ029CC45]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATATAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
AAGAAAATTTCATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATTTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGACTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTATTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTGTTACACATGTAATGTTAGAAATTTATAATTTTTTAGATGGCTATGGAATTTTTTGCA
TACTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAACATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGTTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGGTTTTTTTAGAACCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTCTTGCCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

96.939

99.746

0.967

Multiple sequence alignment