Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AEI00_RS06915 Genome accession   NZ_CP012239
Coordinates   1343507..1343818 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ029CC45     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338507..1348818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI00_RS06895 (AEI00_06930) ctsE 1339376..1340935 (-) 1560 WP_052861618.1 GspE/PulE family protein Machinery gene
  AEI00_RS06900 (AEI00_06935) ctsX 1340925..1341512 (-) 588 WP_052861616.1 hypothetical protein Machinery gene
  AEI00_RS06905 (AEI00_06940) ctsP 1341516..1342124 (-) 609 WP_052861614.1 ATP-binding protein Machinery gene
  AEI00_RS06910 (AEI00_06945) ctsD 1342117..1343529 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI00_RS06915 (AEI00_06950) ctsR 1343507..1343818 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  AEI00_RS06920 (AEI00_06955) nifJ 1343842..1347402 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AEI00_RS06925 (AEI00_06960) - 1347495..1348136 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=152849 AEI00_RS06915 WP_002862131.1 1343507..1343818(-) (ctsR) [Campylobacter jejuni strain CJ029CC45]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=152849 AEI00_RS06915 WP_002862131.1 1343507..1343818(-) (ctsR) [Campylobacter jejuni strain CJ029CC45]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment