Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   A5956_RS06940 Genome accession   NZ_CP015240
Coordinates   1280289..1280948 (+) Length   219 a.a.
NCBI ID   WP_001221502.1    Uniprot ID   B7LGG8
Organism   Escherichia coli strain 2011C-3911     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1275289..1285948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5956_RS06915 (A5956_06260) plsC 1275436..1276173 (-) 738 WP_000965703.1 1-acylglycerol-3-phosphate O-acyltransferase -
  A5956_RS06920 (A5956_06265) parC 1276406..1278664 (-) 2259 WP_001281881.1 DNA topoisomerase IV subunit A -
  A5956_RS06930 (A5956_06275) ygiV 1279210..1279692 (-) 483 WP_000183481.1 AraC family transcriptional regulator -
  A5956_RS06935 (A5956_06280) ygiW 1279745..1280137 (-) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  A5956_RS06940 (A5956_06285) ciaR 1280289..1280948 (+) 660 WP_001221502.1 quorum sensing response regulator transcription factor QseB Regulator
  A5956_RS06945 (A5956_06290) qseC 1280945..1282294 (+) 1350 WP_000673397.1 quorum sensing histidine kinase QseC -
  A5956_RS06950 (A5956_06295) ygiZ 1282340..1282672 (-) 333 WP_000912120.1 DUF2645 family protein -
  A5956_RS06955 (A5956_06300) mdaB 1282991..1283572 (+) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  A5956_RS06960 (A5956_06305) ygiN 1283603..1283917 (+) 315 WP_000958598.1 putative quinol monooxygenase -
  A5956_RS06965 (A5956_06310) parE 1283965..1285857 (-) 1893 WP_000195296.1 DNA topoisomerase IV subunit B -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24745.66 Da        Isoelectric Point: 6.6543

>NTDB_id=152767 A5956_RS06940 WP_001221502.1 1280289..1280948(+) (ciaR) [Escherichia coli strain 2011C-3911]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=152767 A5956_RS06940 WP_001221502.1 1280289..1280948(+) (ciaR) [Escherichia coli strain 2011C-3911]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCGCCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGAGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LGG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365

Multiple sequence alignment