Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   AEI26_RS07375 Genome accession   NZ_CP012212
Coordinates   1407775..1409187 (-) Length   470 a.a.
NCBI ID   WP_002870886.1    Uniprot ID   A0A1S2U5A5
Organism   Campylobacter jejuni strain CJ017CCUA     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1402775..1414187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI26_RS07350 (AEI26_07285) - 1403099..1403863 (+) 765 WP_002855301.1 TSUP family transporter -
  AEI26_RS07355 (AEI26_07290) ctsF 1403856..1405037 (-) 1182 WP_088306180.1 type II secretion system F family protein Machinery gene
  AEI26_RS07360 (AEI26_07295) ctsE 1405034..1406593 (-) 1560 WP_070298498.1 GspE/PulE family protein Machinery gene
  AEI26_RS07365 (AEI26_07300) ctsX 1406583..1407170 (-) 588 WP_070298499.1 transformation system protein Machinery gene
  AEI26_RS07370 (AEI26_07305) ctsP 1407174..1407782 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  AEI26_RS07375 (AEI26_07310) ctsD 1407775..1409187 (-) 1413 WP_002870886.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI26_RS07380 (AEI26_07315) ctsR 1409165..1409476 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  AEI26_RS07385 (AEI26_07320) nifJ 1409500..1413060 (-) 3561 WP_070298500.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AEI26_RS07390 (AEI26_07325) - 1413154..1413795 (-) 642 WP_070298501.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53056.51 Da        Isoelectric Point: 6.1915

>NTDB_id=152335 AEI26_RS07375 WP_002870886.1 1407775..1409187(-) (ctsD) [Campylobacter jejuni strain CJ017CCUA]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFEGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=152335 AEI26_RS07375 WP_002870886.1 1407775..1409187(-) (ctsD) [Campylobacter jejuni strain CJ017CCUA]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAATTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGATGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCAAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAACAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTCAAAGAAAGTTCTAAA
GGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGAATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAGCCAAGAACTATTGCTCCTGATACTATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTGGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTGAAGGAGAAGTTTTAAATTCTAAAGCAACTGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAACGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2U5A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.362

100

0.994

Multiple sequence alignment