Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AEI26_RS07380 Genome accession   NZ_CP012212
Coordinates   1409165..1409476 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ017CCUA     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1404165..1414476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI26_RS07360 (AEI26_07295) ctsE 1405034..1406593 (-) 1560 WP_070298498.1 GspE/PulE family protein Machinery gene
  AEI26_RS07365 (AEI26_07300) ctsX 1406583..1407170 (-) 588 WP_070298499.1 transformation system protein Machinery gene
  AEI26_RS07370 (AEI26_07305) ctsP 1407174..1407782 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  AEI26_RS07375 (AEI26_07310) ctsD 1407775..1409187 (-) 1413 WP_002870886.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI26_RS07380 (AEI26_07315) ctsR 1409165..1409476 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  AEI26_RS07385 (AEI26_07320) nifJ 1409500..1413060 (-) 3561 WP_070298500.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AEI26_RS07390 (AEI26_07325) - 1413154..1413795 (-) 642 WP_070298501.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=152336 AEI26_RS07380 WP_002862131.1 1409165..1409476(-) (ctsR) [Campylobacter jejuni strain CJ017CCUA]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=152336 AEI26_RS07380 WP_002862131.1 1409165..1409476(-) (ctsR) [Campylobacter jejuni strain CJ017CCUA]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment